| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggcagcc | 7 | ||
| MIMAT0028641 | mdo-miR-7320-3p | 2 | ....... | 8 | 100 |
| MIMAT0020136 | cel-miR-4930 | 7 | ....... | 1 | 100 |
| MIMAT0014039 | osa-miR2907d | 1 | ....... | 7 | 100 |
| MIMAT0014038 | osa-miR2907c | 1 | ....... | 7 | 100 |
| MIMAT0014037 | osa-miR2907b | 1 | ....... | 7 | 100 |
| MIMAT0014036 | osa-miR2907a | 1 | ....... | 7 | 100 |
| MIMAT0005550 | mcmv-miR-M87-1 | 2 | ....... | 8 | 100 |
| MIMAT0036845 | oha-miR-22a | 8 | ......_ | 3 | 85 |
| MIMAT0036754 | oha-miR-1788-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036588 | tch-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036076 | chi-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0035715 | mmu-miR-3552 | 7 | _...... | 2 | 85 |
| MIMAT0035596 | dvi-miR-980-3p | 8 | ......_ | 3 | 85 |
| MIMAT0035404 | nve-miR-9443 | 2 | _...... | 7 | 85 |
| MIMAT0035124 | efu-miR-9349 | 8 | _...... | 3 | 85 |
| MIMAT0035070 | efu-miR-9329 | 6 | ......_ | 1 | 85 |
| MIMAT0034951 | efu-miR-9186h | 8 | _...... | 3 | 85 |
| MIMAT0034926 | efu-miR-9186g | 8 | _...... | 3 | 85 |
| MIMAT0034911 | efu-miR-9274 | 7 | _...... | 2 | 85 |
| MIMAT0034562 | eca-miR-9021 | 8 | ......_ | 3 | 85 |
| MIMAT0033801 | pxy-miR-745 | 8 | ......_ | 3 | 85 |
| MIMAT0033164 | ppc-miR-8314-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032669 | ssa-miR-723-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032547 | ssa-miR-22b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032545 | ssa-miR-22a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032413 | ssa-miR-1788-3p | 3 | ......_ | 8 | 85 |
| MIMAT0031740 | bma-miR-1822 | 8 | ......_ | 3 | 85 |
| MIMAT0031653 | bbe-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030718 | prd-miR-7933-5p | 2 | _...... | 7 | 85 |
| MIMAT0030046 | oar-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032194 | lva-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0029851 | mmu-miR-7672-3p | 8 | _...... | 3 | 85 |
| MIMAT0029651 | cbn-miR-1822 | 8 | ......_ | 3 | 85 |
| MIMAT0029611 | crm-miR-1822 | 8 | ......_ | 3 | 85 |
| MIMAT0029480 | ipu-miR-22b | 8 | ......_ | 3 | 85 |
| MIMAT0029479 | ipu-miR-22a | 8 | ......_ | 3 | 85 |
| MIMAT0031141 | aja-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0028962 | oan-miR-7408-5p | 8 | _...... | 3 | 85 |
| MIMAT0028741 | mdo-miR-7364-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028223 | hsa-miR-7156-3p | 3 | _...... | 8 | 85 |
| MIMAT0026276 | ccr-miR-22b | 8 | ......_ | 3 | 85 |
| MIMAT0026275 | ccr-miR-22a | 8 | ......_ | 3 | 85 |
| MIMAT0028141 | ddi-miR-7131c-5p | 6 | _...... | 1 | 85 |
| MIMAT0028137 | ddi-miR-7131a-5p | 7 | _...... | 2 | 85 |
| MIMAT0028003 | mmu-miR-7049-3p | 2 | _...... | 7 | 85 |
| MIMAT0027993 | mmu-miR-7044-3p | 3 | _...... | 8 | 85 |
| MIMAT0027885 | mmu-miR-6991-3p | 1 | _...... | 6 | 85 |
| MIMAT0027809 | mmu-miR-6954-3p | 2 | _...... | 7 | 85 |
| MIMAT0027795 | mmu-miR-6947-3p | 1 | _...... | 6 | 85 |
| MIMAT0027778 | mmu-miR-6939-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027558 | hsa-miR-6829-5p | 8 | _...... | 3 | 85 |
| MIMAT0027425 | hsa-miR-6762-3p | 7 | _...... | 2 | 85 |
| MIMAT0025771 | gga-miR-6669-3p | 3 | _...... | 8 | 85 |
| MIMAT0025762 | gga-miR-6661-5p | 8 | _...... | 3 | 85 |
| MIMAT0025684 | gga-miR-6591-3p | 1 | _...... | 6 | 85 |
| MIMAT0025640 | gga-miR-6567-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025621 | gga-miR-6556-5p | 8 | _...... | 3 | 85 |
| MIMAT0025613 | gga-miR-6553-5p | 2 | _...... | 7 | 85 |
| MIMAT0025427 | pol-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025409 | tgu-miR-1791 | 8 | _...... | 3 | 85 |
| MIMAT0024986 | hme-miR-745 | 8 | ......_ | 3 | 85 |
| MIMAT0027303 | ppe-miR319b | 8 | ......_ | 3 | 85 |
| MIMAT0024445 | mse-miR-745 | 8 | ......_ | 3 | 85 |
| MIMAT0024097 | ggo-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0023857 | cgr-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0023278 | osa-miR812v | 8 | _...... | 3 | 85 |
| MIMAT0022670 | ola-miR-1788 | 3 | ......_ | 8 | 85 |
| MIMAT0022618 | ola-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0022596 | ola-miR-187 | 6 | _...... | 1 | 85 |
| MIMAT0023049 | tur-miR-745-3p | 8 | ......_ | 3 | 85 |
| MIMAT0021806 | aca-miR-1788-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021536 | asu-miR-1822-3p | 8 | ......_ | 3 | 85 |
| MIMAT0020194 | dme-miR-4968-5p | 8 | ......_ | 3 | 85 |
| MIMAT0020493 | bfl-miR-4900b | 8 | ......_ | 3 | 85 |
| MIMAT0019780 | hsa-miR-4690-3p | 1 | _...... | 6 | 85 |
| MIMAT0019562 | pma-miR-1788a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0019401 | pma-miR-22b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019399 | pma-miR-22a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0018503 | hvu-miR444a | 8 | ......_ | 3 | 85 |
| MIMAT0018226 | tae-miR444b | 8 | ......_ | 3 | 85 |
| MIMAT0018865 | tca-miR-980-3p | 8 | ......_ | 3 | 85 |
| MIMAT0018657 | tca-miR-3816-3p | 8 | ......_ | 3 | 85 |
| MIMAT0018614 | ame-miR-980 | 8 | ......_ | 3 | 85 |
| MIMAT0018024 | vvi-miR3629c | 6 | _...... | 1 | 85 |
| MIMAT0018023 | vvi-miR3629b | 6 | _...... | 1 | 85 |
| MIMAT0018022 | vvi-miR3629a-3p | 6 | _...... | 1 | 85 |
| MIMAT0016517 | cin-miR-4013b-3p | 8 | _...... | 3 | 85 |
| MIMAT0016515 | cin-miR-4013a-3p | 8 | _...... | 3 | 85 |
| MIMAT0017813 | rno-miR-3552 | 7 | _...... | 2 | 85 |
| MIMAT0016046 | ppy-miR-604 | 7 | _...... | 2 | 85 |
| MIMAT0015710 | ssc-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0026971 | tgu-miR-2987-5p | 2 | _...... | 7 | 85 |
| MIMAT0014428 | cqu-miR-980 | 8 | ......_ | 3 | 85 |
| MIMAT0014236 | aae-miR-980-3p | 8 | ......_ | 3 | 85 |
| MIMAT0014217 | aae-miR-252-3p | 8 | ......_ | 3 | 85 |
| MIMAT0013031 | eca-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0017371 | rno-miR-666-3p | 6 | _...... | 1 | 85 |
| MIMAT0012809 | ptr-miR-604 | 7 | _...... | 2 | 85 |
| MIMAT0013626 | bmo-miR-745-3p | 8 | ......_ | 3 | 85 |
| MIMAT0012646 | dpu-miR-745 | 8 | ......_ | 3 | 85 |
| MIMAT0012482 | dsi-miR-980-3p | 8 | ......_ | 3 | 85 |
| MIMAT0012286 | dps-miR-2502 | 3 | ......_ | 8 | 85 |
| MIMAT0012224 | dps-miR-980-3p | 8 | ......_ | 3 | 85 |
| MIMAT0012173 | bdi-miR444a | 8 | ......_ | 3 | 85 |
| MIMAT0012055 | bta-miR-2466-3p | 1 | _...... | 6 | 85 |
| MIMAT0011929 | bta-miR-2381 | 8 | _...... | 3 | 85 |
| MIMAT0011925 | bta-miR-2379 | 7 | _...... | 2 | 85 |
| MIMAT0011295 | dre-miR-1788-3p | 3 | ......_ | 8 | 85 |
| MIMAT0010052 | osa-miR2094-5p | 7 | _...... | 2 | 85 |
| MIMAT0009546 | cte-miR-745b | 8 | ......_ | 3 | 85 |
| MIMAT0009470 | bfl-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0007749 | gga-miR-1845 | 8 | _...... | 3 | 85 |
| MIMAT0006733 | cfa-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0006589 | cel-miR-1822-3p | 8 | ......_ | 3 | 85 |
| MIMAT0006459 | mml-miR-604 | 6 | _...... | 1 | 85 |
| MIMAT0007704 | gga-miR-1791-5p | 8 | _...... | 3 | 85 |
| MIMAT0007701 | gga-miR-1788-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026782 | gga-miR-1754-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007436 | gga-miR-1575 | 3 | ......_ | 8 | 85 |
| MIMAT0007330 | gga-miR-1453 | 3 | ......_ | 8 | 85 |
| MIMAT0007288 | gga-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005974 | osa-miR444d.1 | 8 | ......_ | 3 | 85 |
| MIMAT0006962 | oan-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005380 | cre-miR1144a.1 | 3 | ......_ | 8 | 85 |
| MIMAT0005351 | tae-miR444a | 8 | ......_ | 3 | 85 |
| MIMAT0005496 | dme-miR-980-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004092 | mdo-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0012536 | bta-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003672 | xtr-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004823 | mmu-miR-666-3p | 6 | _...... | 1 | 85 |
| MIMAT0014818 | mmu-miR-3106-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003317 | hsa-miR-647 | 8 | _...... | 3 | 85 |
| MIMAT0003272 | hsa-miR-604 | 7 | _...... | 2 | 85 |
| MIMAT0003100 | tni-miR-22a | 8 | ......_ | 3 | 85 |
| MIMAT0003099 | fru-miR-22a | 8 | ......_ | 3 | 85 |
| MIMAT0003046 | tni-miR-22b | 8 | ......_ | 3 | 85 |
| MIMAT0003045 | fru-miR-22b | 8 | ......_ | 3 | 85 |
| MIMAT0002335 | mne-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0002334 | lla-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0002333 | sla-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0002332 | ptr-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0002331 | ppy-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0002330 | mml-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0002329 | lca-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0002328 | ppa-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0002327 | age-miR-22 | 8 | ......_ | 3 | 85 |
| MIMAT0001789 | dre-miR-22b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0001788 | dre-miR-22a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0001617 | osa-miR444a-3p.1 | 8 | ......_ | 3 | 85 |
| MIMAT0000791 | rno-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0000531 | mmu-miR-22-3p | 8 | ......_ | 3 | 85 |
| MIMAT0000077 | hsa-miR-22-3p | 8 | ......_ | 3 | 85 |
