| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggccggg | 7 | ||
| MIMAT0031763 | hbv-miR-B2-3p | 2 | ....... | 8 | 100 |
| MIMAT0027601 | hsa-miR-6850-3p | 7 | ....... | 1 | 100 |
| MIMAT0035709 | bhv5-miR-B12 | 3 | ......_ | 8 | 85 |
| MIMAT0034327 | cfa-miR-8834a | 2 | _...... | 7 | 85 |
| MIMAT0032775 | ath-miR8176 | 1 | ......_ | 6 | 85 |
| MIMAT0032743 | ssa-miR-8159-3p | 3 | ......_ | 8 | 85 |
| MIMAT0031770 | hbv-miR-B21RC-5p | 3 | _...... | 8 | 85 |
| MIMAT0030690 | prd-miR-7923-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028705 | mdo-miR-7346-3p | 1 | _...... | 6 | 85 |
| MIMAT0027468 | hsa-miR-6784-5p | 1 | _...... | 6 | 85 |
| MIMAT0027462 | hsa-miR-6781-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025819 | gga-miR-6709-5p | 8 | _...... | 3 | 85 |
| MIMAT0025351 | pde-miR1314 | 6 | ......_ | 1 | 85 |
| MIMAT0023269 | osa-miR5800 | 6 | _...... | 1 | 85 |
| MIMAT0022126 | osa-miR5493 | 2 | _...... | 7 | 85 |
| MIMAT0020214 | dme-miR-4981-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020115 | bfl-miR-4872b | 2 | _...... | 7 | 85 |
| MIMAT0020114 | bfl-miR-4872a | 2 | _...... | 7 | 85 |
| MIMAT0019807 | hsa-miR-4707-5p | 8 | _...... | 3 | 85 |
| MIMAT0018851 | tca-miR-3879-3p | 8 | ......_ | 3 | 85 |
| MIMAT0018556 | ame-miR-3779 | 1 | _...... | 6 | 85 |
| MIMAT0016595 | cin-miR-4053-5p | 2 | _...... | 7 | 85 |
| MIMAT0014549 | tgu-miR-2992 | 7 | _...... | 2 | 85 |
| MIMAT0013848 | bta-miR-2890 | 8 | _...... | 3 | 85 |
| MIMAT0020945 | mtr-miR2592a-5p | 6 | _...... | 1 | 85 |
| MIMAT0009443 | mmu-miR-1946b | 1 | _...... | 6 | 85 |
| MIMAT0009412 | mmu-miR-1946a | 2 | _...... | 7 | 85 |
| MIMAT0026916 | hsa-miR-1908-3p | 6 | ......_ | 1 | 85 |
| MIMAT0007717 | gga-miR-1801 | 6 | _...... | 1 | 85 |
| MIMAT0007419 | gga-miR-1561 | 1 | _...... | 6 | 85 |
| MIMAT0026773 | mdo-miR-1549-5p | 3 | _...... | 8 | 85 |
| MIMAT0007318 | oan-miR-1420g-5p | 8 | ......_ | 3 | 85 |
| MIMAT0004984 | hsa-miR-941 | 8 | _...... | 3 | 85 |
| MIMAT0000327 | cel-miR-271 | 3 | _...... | 8 | 85 |
