| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggcgctg | 7 | ||
| MIMAT0014695 | hsv1-miR-H17 | 2 | ....... | 8 | 100 |
| MIMAT0037029 | ssc-miR-9811-5p | 2 | _...... | 7 | 85 |
| MIMAT0036934 | oha-miR-458-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035189 | efu-miR-339 | 8 | ......_ | 3 | 85 |
| MIMAT0034529 | eca-miR-8992 | 2 | _...... | 7 | 85 |
| MIMAT0034394 | cfa-miR-8889 | 2 | _...... | 7 | 85 |
| MIMAT0034277 | pra-miR8788b-3p | 1 | _...... | 6 | 85 |
| MIMAT0034275 | pra-miR8788a-3p | 1 | _...... | 6 | 85 |
| MIMAT0034269 | pin-miR8788-3p | 1 | _...... | 6 | 85 |
| MIMAT0032749 | ssa-miR-8161-3p | 7 | _...... | 2 | 85 |
| MIMAT0032680 | ssa-miR-730a-3p | 8 | _...... | 3 | 85 |
| MIMAT0032652 | ssa-miR-460-3p | 8 | _...... | 3 | 85 |
| MIMAT0032647 | ssa-miR-458-5p | 6 | ......_ | 1 | 85 |
| MIMAT0029518 | ipu-miR-460 | 8 | _...... | 3 | 85 |
| MIMAT0029108 | gga-miR-7477-5p | 7 | _...... | 2 | 85 |
| MIMAT0029088 | gga-miR-7467-5p | 8 | _...... | 3 | 85 |
| MIMAT0028954 | oan-miR-7406-5p | 6 | _...... | 1 | 85 |
| MIMAT0028571 | mdo-miR-7293-3p | 1 | _...... | 6 | 85 |
| MIMAT0028499 | mdo-miR-7265-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026307 | ccr-miR-460-3p | 8 | _...... | 3 | 85 |
| MIMAT0027551 | hsa-miR-6825-3p | 1 | _...... | 6 | 85 |
| MIMAT0025640 | gga-miR-6567-3p | 8 | _...... | 3 | 85 |
| MIMAT0024161 | ggo-miR-339 | 8 | ......_ | 3 | 85 |
| MIMAT0022643 | ola-miR-460-3p | 7 | _...... | 2 | 85 |
| MIMAT0021973 | aca-miR-460b-3p | 7 | _...... | 2 | 85 |
| MIMAT0021971 | aca-miR-460a-3p | 8 | _...... | 3 | 85 |
| MIMAT0021562 | asu-miR-5352-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019866 | hsa-miR-4738-5p | 8 | _...... | 3 | 85 |
| MIMAT0016690 | cin-miR-4103-3p | 1 | _...... | 6 | 85 |
| MIMAT0014658 | tgu-miR-460a-3p | 8 | _...... | 3 | 85 |
| MIMAT0014624 | tgu-miR-460b-3p | 7 | _...... | 2 | 85 |
| MIMAT0026962 | tgu-miR-458-5p | 6 | ......_ | 1 | 85 |
| MIMAT0015353 | zma-miR397b-3p | 7 | _...... | 2 | 85 |
| MIMAT0013844 | bta-miR-2886 | 6 | ......_ | 1 | 85 |
| MIMAT0026945 | mdo-miR-460-3p | 8 | _...... | 3 | 85 |
| MIMAT0013540 | cte-miR-2688-5p | 1 | _...... | 6 | 85 |
| MIMAT0008107 | ptr-miR-339 | 8 | ......_ | 3 | 85 |
| MIMAT0006280 | mml-miR-339-3p | 8 | ......_ | 3 | 85 |
| MIMAT0007745 | gga-miR-458a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007327 | gga-miR-460b-3p | 8 | _...... | 3 | 85 |
| MIMAT0005957 | osa-miR1423-3p | 6 | ......_ | 1 | 85 |
| MIMAT0007227 | oan-miR-1409-3p | 6 | _...... | 1 | 85 |
| MIMAT0007009 | oan-miR-458-5p | 6 | ......_ | 1 | 85 |
| MIMAT0006916 | oan-miR-460-3p | 8 | _...... | 3 | 85 |
| MIMAT0026646 | gga-miR-460a-3p | 8 | _...... | 3 | 85 |
| MIMAT0015236 | bmo-miR-305-3p | 1 | ......_ | 6 | 85 |
| MIMAT0002998 | tni-miR-460 | 8 | _...... | 3 | 85 |
| MIMAT0002997 | fru-miR-460 | 8 | _...... | 3 | 85 |
| MIMAT0015217 | kshv-miR-K12-7-5p | 6 | ......_ | 1 | 85 |
| MIMAT0001888 | dre-miR-460-3p | 8 | _...... | 3 | 85 |
| MIMAT0032005 | dre-miR-458-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004702 | hsa-miR-339-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004649 | mmu-miR-339-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004648 | rno-miR-339-3p | 8 | ......_ | 3 | 85 |
