| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggcgggc | 7 | ||
| MIMAT0021382 | isc-miR-5311 | 8 | ....... | 2 | 100 |
| MIMAT0020158 | dme-miR-4948-5p | 2 | ....... | 8 | 100 |
| MIMAT0019808 | hsa-miR-4707-3p | 8 | ....... | 2 | 100 |
| MIMAT0013857 | bta-miR-2899 | 2 | ....... | 8 | 100 |
| MIMAT0037153 | ata-miR168-3p | 6 | ......_ | 1 | 85 |
| MIMAT0035837 | bra-miR168a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0035835 | bra-miR168c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0035833 | bra-miR168b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033075 | ppc-miR-8285-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032916 | ppc-miR-63j-5p | 8 | _...... | 3 | 85 |
| MIMAT0029849 | mmu-miR-7671-3p | 3 | _...... | 8 | 85 |
| MIMAT0031132 | sly-miR168b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029001 | oan-miR-7425-3p | 3 | ......_ | 8 | 85 |
| MIMAT0025583 | mmu-miR-6538 | 2 | _...... | 7 | 85 |
| MIMAT0022236 | mtr-miR168c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027053 | bdi-miR168-3p | 6 | ......_ | 1 | 85 |
| MIMAT0020637 | mmu-miR-5126 | 1 | _...... | 6 | 85 |
| MIMAT0019919 | hsa-miR-4767 | 2 | _...... | 7 | 85 |
| MIMAT0019665 | pma-miR-4631 | 2 | _...... | 7 | 85 |
| MIMAT0018076 | hsa-miR-3656 | 1 | ......_ | 6 | 85 |
| MIMAT0017876 | rno-miR-3584-3p | 6 | _...... | 1 | 85 |
| MIMAT0016233 | ppy-miR-1471 | 6 | _...... | 1 | 85 |
| MIMAT0017482 | aly-miR168a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014696 | hsv1-miR-H18 | 6 | ......_ | 1 | 85 |
| MIMAT0013970 | bhv1-miR-B8-5p | 2 | _...... | 7 | 85 |
| MIMAT0013858 | bta-miR-2900 | 3 | ......_ | 8 | 85 |
| MIMAT0013839 | bta-miR-2881 | 3 | ......_ | 8 | 85 |
| MIMAT0012855 | rno-miR-666-5p | 2 | _...... | 7 | 85 |
| MIMAT0012009 | bta-miR-2436-3p | 6 | ......_ | 1 | 85 |
| MIMAT0011986 | bta-miR-2419-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007349 | hsa-miR-1471 | 6 | _...... | 1 | 85 |
| MIMAT0007115 | oan-miR-1379 | 2 | _...... | 7 | 85 |
| MIMAT0003737 | mmu-miR-666-5p | 2 | _...... | 7 | 85 |
| MIMAT0022897 | ptc-miR168b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022896 | ptc-miR168a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015192 | zma-miR168b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015191 | zma-miR168a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0020836 | dme-miR-310-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000320 | cel-miR-264 | 1 | ......_ | 6 | 85 |
| MIMAT0031884 | ath-miR168a-3p | 6 | ......_ | 1 | 85 |
