| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggcggtca | 8 | ||
| MIMAT0037137 | ata-miR169c-3p | 1 | ........ | 8 | 100 |
| MIMAT0016610 | cin-miR-4061-5p | 2 | ......._ | 8 | 87 |
| MIMAT0005560 | mcmv-miR-m108-2-5p.1 | 1 | _....... | 7 | 87 |
| MIMAT0026431 | sbi-miR169d-3p | 2 | ......._ | 8 | 87 |
| MIMAT0027813 | mmu-miR-6956-3p | 8 | .c...... | 1 | 87 |
| MIMAT0022109 | pti-miR5476 | 8 | .t...... | 1 | 87 |
| MIMAT0018641 | tca-miR-3809-3p | 1 | .t...... | 8 | 87 |
| MIMAT0036881 | oha-miR-29a-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0036116 | chi-miR-29c-5p | 6 | __...... | 1 | 75 |
| MIMAT0035656 | bra-miR9552b-3p | 6 | __...... | 1 | 75 |
| MIMAT0034483 | eca-miR-8954 | 2 | ......__ | 7 | 75 |
| MIMAT0034288 | cfa-miR-8798 | 2 | _......_ | 7 | 75 |
| MIMAT0033542 | sma-miR-8419-5p | 8 | __...... | 3 | 75 |
| MIMAT0032960 | ppc-miR-8248-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030534 | prd-miR-5358a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030263 | bdi-miR7758-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029964 | mtr-miR2587g | 7 | __...... | 2 | 75 |
| MIMAT0029567 | ipu-miR-7568 | 7 | __...... | 2 | 75 |
| MIMAT0029109 | gga-miR-7477-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028574 | mdo-miR-7295-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028191 | dev-miR-D17-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025300 | mja-miR-6492 | 8 | __...... | 3 | 75 |
| MIMAT0023835 | cgr-miR-1973 | 6 | __...... | 1 | 75 |
| MIMAT0023023 | bra-miR5724 | 7 | ......__ | 2 | 75 |
| MIMAT0021913 | aca-miR-29a-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0020725 | bdi-miR5178-3p | 8 | __...... | 3 | 75 |
| MIMAT0020149 | dme-miR-4941-3p | 1 | ......__ | 6 | 75 |
| MIMAT0019658 | pma-miR-4624 | 3 | _......_ | 8 | 75 |
| MIMAT0019581 | pma-miR-4549 | 8 | _......_ | 3 | 75 |
| MIMAT0032116 | hsa-miR-4485-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018631 | tca-miR-2765-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016565 | cin-miR-4038-5p | 1 | __...... | 6 | 75 |
| MIMAT0031063 | tgu-miR-29a-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0012715 | hvt-miR-H4-3p | 2 | ......__ | 7 | 75 |
| MIMAT0013257 | mtr-miR2587f | 7 | __...... | 2 | 75 |
| MIMAT0013256 | mtr-miR2587e | 7 | __...... | 2 | 75 |
| MIMAT0013255 | mtr-miR2587d | 7 | __...... | 2 | 75 |
| MIMAT0013254 | mtr-miR2587c | 7 | __...... | 2 | 75 |
| MIMAT0013253 | mtr-miR2587b | 7 | __...... | 2 | 75 |
| MIMAT0013252 | mtr-miR2587a | 7 | __...... | 2 | 75 |
| MIMAT0011490 | cbr-miR-64b | 8 | _......_ | 3 | 75 |
| MIMAT0026919 | bta-miR-29d-5p | 6 | __...... | 1 | 75 |
| MIMAT0007567 | gga-miR-1680-3p | 3 | ......__ | 8 | 75 |
| MIMAT0009167 | oan-miR-29a-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0005555 | mcmv-miR-m107-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0005551 | mcmv-miR-m88-1-5p | 7 | __...... | 2 | 75 |
| MIMAT0003676 | xtr-miR-29c-5p | 6 | __...... | 1 | 75 |
| MIMAT0002194 | kshv-miR-K12-3-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001582 | hcmv-miR-US25-2-5p | 2 | _......_ | 7 | 75 |
| MIMAT0001303 | cbr-miR-360 | 6 | __...... | 1 | 75 |
| MIMAT0003154 | rno-miR-29c-5p | 6 | __...... | 1 | 75 |
| MIMAT0000702 | cel-miR-360-3p | 6 | __...... | 1 | 75 |
| MIMAT0004673 | hsa-miR-29c-5p | 6 | __...... | 1 | 75 |
| MIMAT0004632 | mmu-miR-29c-5p | 6 | __...... | 1 | 75 |
