| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggcgtgtt | 8 | ||
| MIMAT0007394 | gma-miR1532 | 7 | _....... | 1 | 87 |
| MIMAT0031528 | ppe-miR7122a-3p | 1 | .c...... | 8 | 87 |
| MIMAT0037243 | ata-miR164c-3p | 3 | __...... | 8 | 75 |
| MIMAT0036669 | oha-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0035869 | bra-miR164c-3p | 3 | __...... | 8 | 75 |
| MIMAT0035867 | bra-miR164d-3p | 3 | __...... | 8 | 75 |
| MIMAT0035865 | bra-miR164b-3p | 3 | __...... | 8 | 75 |
| MIMAT0034579 | eca-miR-9037 | 7 | ......__ | 2 | 75 |
| MIMAT0033976 | sly-miR164b-3p | 3 | __...... | 8 | 75 |
| MIMAT0031530 | ppe-miR7122b-3p | 2 | __...... | 7 | 75 |
| MIMAT0030483 | prd-miR-50-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029354 | lja-miR7531 | 1 | __...... | 6 | 75 |
| MIMAT0027843 | mmu-miR-6970-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025861 | blv-miR-B2-3p | 2 | _......_ | 7 | 75 |
| MIMAT0025430 | pol-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0027328 | ppe-miR398b | 1 | __...... | 6 | 75 |
| MIMAT0023574 | tca-miR-6016-3p | 6 | ......__ | 1 | 75 |
| MIMAT0022689 | ola-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0023088 | tur-miR-124-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0022684 | hvsa-miR-HSUR4-5p | 3 | __...... | 8 | 75 |
| MIMAT0022180 | osa-miR5544 | 8 | __...... | 3 | 75 |
| MIMAT0021685 | sbi-miR5387a | 7 | __...... | 2 | 75 |
| MIMAT0020159 | dme-miR-4948-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019681 | osa-miR812o-5p | 1 | __...... | 6 | 75 |
| MIMAT0019610 | pma-miR-4577 | 1 | ......__ | 6 | 75 |
| MIMAT0019444 | pma-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0018925 | hsa-miR-1268b | 3 | ......__ | 8 | 75 |
| MIMAT0016670 | cin-miR-4092-5p | 1 | __...... | 6 | 75 |
| MIMAT0016192 | ppy-miR-1268 | 3 | ......__ | 8 | 75 |
| MIMAT0017454 | aly-miR164c-3p | 3 | __...... | 8 | 75 |
| MIMAT0015612 | bmo-miR-3406-3p | 3 | _......_ | 8 | 75 |
| MIMAT0014630 | tgu-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0015372 | aae-miR-263a-3p | 1 | __...... | 6 | 75 |
| MIMAT0016956 | rlcv-miR-rL1-31-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013395 | mtr-miR2631 | 8 | _......_ | 3 | 75 |
| MIMAT0012206 | dme-miR-2496-5p | 3 | _......_ | 8 | 75 |
| MIMAT0011796 | bta-miR-2289 | 2 | __...... | 7 | 75 |
| MIMAT0019123 | tca-miR-275-5p | 1 | __...... | 6 | 75 |
| MIMAT0017336 | gma-miR171b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015257 | cin-miR-124-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0007113 | oan-miR-124a-5p | 1 | __...... | 6 | 75 |
| MIMAT0005922 | hsa-miR-1268a | 3 | ......__ | 8 | 75 |
| MIMAT0003483 | mmu-miR-696 | 1 | _......_ | 6 | 75 |
| MIMAT0031962 | dre-miR-124-6-5p | 1 | __...... | 6 | 75 |
| MIMAT0031960 | dre-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0015136 | zma-miR164a-3p | 3 | __...... | 8 | 75 |
| MIMAT0031916 | ath-miR164c-3p | 3 | __...... | 8 | 75 |
| MIMAT0004728 | rno-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0004591 | hsa-miR-124-5p | 1 | __...... | 6 | 75 |
| MIMAT0004527 | mmu-miR-124-5p | 1 | __...... | 6 | 75 |
