| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggctggg | 7 | ||
| MIMAT0035089 | efu-miR-204 | 1 | ....... | 7 | 100 |
| MIMAT0034472 | eca-miR-8943 | 2 | ....... | 8 | 100 |
| MIMAT0033386 | str-miR-7880r-5p | 2 | ....... | 8 | 100 |
| MIMAT0032709 | ssa-miR-92a-3-5p | 2 | ....... | 8 | 100 |
| MIMAT0027974 | mmu-miR-7035-5p | 1 | ....... | 7 | 100 |
| MIMAT0025316 | prv-miR-LLT11b | 2 | ....... | 8 | 100 |
| MIMAT0025315 | prv-miR-LLT11a | 2 | ....... | 8 | 100 |
| MIMAT0024009 | cgr-miR-92a-5p | 2 | ....... | 8 | 100 |
| MIMAT0023252 | hsa-miR-5787 | 2 | ....... | 8 | 100 |
| MIMAT0022297 | hsa-miR-5589-5p | 1 | ....... | 7 | 100 |
| MIMAT0019041 | hsa-miR-4505 | 2 | ....... | 8 | 100 |
| MIMAT0014874 | mmu-miR-3083-5p | 2 | ....... | 8 | 100 |
| MIMAT0026843 | mml-miR-204-3p | 1 | ....... | 7 | 100 |
| MIMAT0007449 | gga-miR-1587 | 2 | ....... | 8 | 100 |
| MIMAT0006875 | oan-miR-1343-3p | 2 | ....... | 8 | 100 |
| MIMAT0031924 | dre-miR-204-3p | 1 | ....... | 7 | 100 |
| MIMAT0036933 | oha-miR-456 | 3 | ......_ | 8 | 85 |
| MIMAT0036893 | oha-miR-30c-2-3p | 2 | _...... | 7 | 85 |
| MIMAT0036813 | oha-miR-204-1-3p | 1 | _...... | 6 | 85 |
| MIMAT0036791 | oha-miR-199b-5p | 6 | _...... | 1 | 85 |
| MIMAT0036051 | chi-miR-204-3p | 1 | _...... | 6 | 85 |
| MIMAT0034762 | eca-miR-9181 | 3 | _...... | 8 | 85 |
| MIMAT0034704 | eca-miR-1911 | 8 | ......_ | 3 | 85 |
| MIMAT0034702 | eca-miR-8908e | 8 | _...... | 3 | 85 |
| MIMAT0034482 | eca-miR-8953 | 3 | ......_ | 8 | 85 |
| MIMAT0033816 | pxy-miR-8536a | 8 | _...... | 3 | 85 |
| MIMAT0033378 | str-miR-7880q-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032646 | ssa-miR-456-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032491 | ssa-miR-204-4-3p | 1 | _...... | 6 | 85 |
| MIMAT0032490 | ssa-miR-204-3-3p | 1 | _...... | 6 | 85 |
| MIMAT0031698 | bbe-miR-4874-3p | 3 | ......_ | 8 | 85 |
| MIMAT0031180 | hsa-miR-7977 | 8 | _...... | 3 | 85 |
| MIMAT0029906 | mmu-miR-7688-5p | 3 | _...... | 8 | 85 |
| MIMAT0029845 | mmu-miR-7669-3p | 3 | _...... | 8 | 85 |
| MIMAT0029799 | mmu-miR-7648-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029551 | ipu-miR-7555 | 8 | ......_ | 3 | 85 |
| MIMAT0029514 | ipu-miR-456 | 3 | ......_ | 8 | 85 |
| MIMAT0028964 | oan-miR-7409-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028798 | mdo-miR-7374c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028571 | mdo-miR-7293-3p | 3 | _...... | 8 | 85 |
| MIMAT0028151 | ssc-miR-7138-5p | 7 | _...... | 2 | 85 |
| MIMAT0027852 | mmu-miR-6975-5p | 1 | _...... | 6 | 85 |
| MIMAT0027780 | mmu-miR-6940-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027587 | hsa-miR-6842-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027345 | hsa-miR-6720-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025738 | gga-miR-6641-3p | 3 | _...... | 8 | 85 |
| MIMAT0025733 | gga-miR-6637-3p | 1 | _...... | 6 | 85 |
| MIMAT0025686 | gga-miR-6593-5p | 2 | _...... | 7 | 85 |
| MIMAT0025680 | gga-miR-6588-3p | 3 | _...... | 8 | 85 |
| MIMAT0025481 | hsa-miR-6512-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025249 | ptc-miR6446 | 3 | _...... | 8 | 85 |
| MIMAT0025074 | rno-miR-6333 | 3 | ......_ | 8 | 85 |
| MIMAT0024624 | mml-miR-6131 | 1 | ......_ | 6 | 85 |
| MIMAT0024615 | hsa-miR-6131 | 1 | ......_ | 6 | 85 |
| MIMAT0024605 | ptr-miR-6131 | 1 | ......_ | 6 | 85 |
| MIMAT0023994 | cgr-miR-664-5p | 3 | ......_ | 8 | 85 |
| MIMAT0022790 | sha-miR-204 | 1 | _...... | 6 | 85 |
| MIMAT0022129 | osa-miR5496 | 6 | ......_ | 1 | 85 |
| MIMAT0021966 | aca-miR-456 | 3 | ......_ | 8 | 85 |
| MIMAT0021854 | aca-miR-204a-3p | 1 | _...... | 6 | 85 |
| MIMAT0020655 | bdi-miR169i | 6 | ......_ | 1 | 85 |
| MIMAT0021021 | hsa-miR-5001-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020454 | bfl-miR-4874-3p | 3 | ......_ | 8 | 85 |
| MIMAT0019853 | hsa-miR-4731-5p | 2 | _...... | 7 | 85 |
| MIMAT0019782 | hsa-miR-4691-3p | 6 | ......_ | 1 | 85 |
| MIMAT0019554 | pma-miR-456 | 3 | ......_ | 8 | 85 |
| MIMAT0019069 | hsa-miR-4530 | 6 | _...... | 1 | 85 |
| MIMAT0019033 | hsa-miR-4498 | 3 | ......_ | 8 | 85 |
| MIMAT0019027 | hsa-miR-4492 | 3 | ......_ | 8 | 85 |
| MIMAT0019020 | hsa-miR-4486 | 1 | _...... | 6 | 85 |
| MIMAT0018985 | hsa-miR-3135b | 1 | ......_ | 6 | 85 |
| MIMAT0016342 | ahy-miR3516 | 1 | _...... | 6 | 85 |
| MIMAT0016062 | ppy-miR-621 | 1 | ......_ | 6 | 85 |
| MIMAT0016053 | ppy-miR-612 | 1 | _...... | 6 | 85 |
| MIMAT0017769 | esi-miR3454e-5p | 8 | _...... | 3 | 85 |
| MIMAT0017759 | esi-miR3454b-5p | 8 | _...... | 3 | 85 |
| MIMAT0017751 | esi-miR3454c-5p | 8 | _...... | 3 | 85 |
| MIMAT0017747 | esi-miR3454a-5p | 8 | _...... | 3 | 85 |
| MIMAT0017745 | esi-miR3454g-5p | 8 | _...... | 3 | 85 |
| MIMAT0015078 | hsa-miR-3194-5p | 8 | ......_ | 3 | 85 |
| MIMAT0014865 | mmu-miR-3078-3p | 3 | _...... | 8 | 85 |
| MIMAT0014469 | tgu-miR-456-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012957 | eca-miR-1905b | 8 | ......_ | 3 | 85 |
| MIMAT0012815 | ptr-miR-762 | 3 | ......_ | 8 | 85 |
| MIMAT0012791 | mml-miR-762 | 3 | ......_ | 8 | 85 |
| MIMAT0017353 | mmu-miR-664-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012458 | dsi-miR-1000-3p | 3 | _...... | 8 | 85 |
| MIMAT0012266 | dps-miR-1000-3p | 3 | _...... | 8 | 85 |
| MIMAT0012241 | dps-miR-311-5p | 3 | _...... | 8 | 85 |
| MIMAT0012078 | bta-miR-664a | 3 | ......_ | 8 | 85 |
| MIMAT0011991 | bta-miR-320b | 2 | _...... | 7 | 85 |
| MIMAT0009386 | bta-miR-940 | 3 | ......_ | 8 | 85 |
| MIMAT0008274 | ptr-miR-612 | 1 | _...... | 6 | 85 |
| MIMAT0007593 | gga-miR-1701 | 1 | ......_ | 6 | 85 |
| MIMAT0007262 | oan-miR-1419e-5p | 3 | _...... | 8 | 85 |
| MIMAT0006946 | oan-miR-1353 | 6 | ......_ | 1 | 85 |
| MIMAT0006934 | oan-miR-1349 | 1 | _...... | 6 | 85 |
| MIMAT0020900 | dme-miR-1000-3p | 3 | _...... | 8 | 85 |
| MIMAT0004250 | ath-miR832-5p | 2 | _...... | 7 | 85 |
| MIMAT0004016 | sme-miR-749 | 1 | _...... | 6 | 85 |
| MIMAT0003777 | gga-miR-456-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032012 | dre-miR-735-5p | 1 | ......_ | 6 | 85 |
| MIMAT0003892 | mmu-miR-762 | 3 | ......_ | 8 | 85 |
| MIMAT0010313 | hsa-miR-762 | 3 | ......_ | 8 | 85 |
| MIMAT0017229 | rno-miR-664-2-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017228 | rno-miR-664-1-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026622 | hsa-miR-619-5p | 1 | _...... | 6 | 85 |
| MIMAT0003280 | hsa-miR-612 | 1 | _...... | 6 | 85 |
| MIMAT0002184 | kshv-miR-K12-9-5p | 7 | _...... | 2 | 85 |
| MIMAT0001882 | dre-miR-456 | 3 | ......_ | 8 | 85 |
| MIMAT0031987 | dre-miR-204-2-3p | 1 | _...... | 6 | 85 |
| MIMAT0004739 | rno-miR-204-3p | 1 | _...... | 6 | 85 |
| MIMAT0022693 | hsa-miR-204-3p | 1 | _...... | 6 | 85 |
| MIMAT0017002 | mmu-miR-204-3p | 1 | _...... | 6 | 85 |
