| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gggaacg | 7 | ||
| MIMAT0035722 | rno-miR-1247-3p | 2 | ....... | 8 | 100 |
| MIMAT0028359 | mml-miR-1247-3p | 2 | ....... | 8 | 100 |
| MIMAT0025550 | bta-miR-1247-3p | 2 | ....... | 8 | 100 |
| MIMAT0008011 | ptr-miR-1292 | 2 | ....... | 8 | 100 |
| MIMAT0005943 | hsa-miR-1292-5p | 2 | ....... | 8 | 100 |
| MIMAT0014801 | mmu-miR-1247-3p | 2 | ....... | 8 | 100 |
| MIMAT0020789 | dme-miR-6-3-5p | 2 | ....... | 8 | 100 |
| MIMAT0037248 | ata-miR166c-5p | 1 | _...... | 6 | 85 |
| MIMAT0037184 | ata-miR395f-5p | 6 | ......_ | 1 | 85 |
| MIMAT0037162 | ata-miR395a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0037150 | ata-miR395b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0037014 | ssc-miR-9796-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035774 | tae-miR1137b-5p | 8 | _...... | 3 | 85 |
| MIMAT0034148 | gra-miR8736 | 3 | _...... | 8 | 85 |
| MIMAT0033711 | pxy-miR-8499c | 7 | _...... | 2 | 85 |
| MIMAT0031493 | ppe-miR395o | 6 | ......_ | 1 | 85 |
| MIMAT0031479 | ppe-miR395b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031477 | ppe-miR395a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030405 | ptc-miR7832 | 8 | ......_ | 3 | 85 |
| MIMAT0029630 | crm-miR-7611 | 3 | ......_ | 8 | 85 |
| MIMAT0028662 | mdo-miR-505-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028312 | mml-miR-6827-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028021 | mmu-miR-7058-3p | 8 | _...... | 3 | 85 |
| MIMAT0027544 | hsa-miR-6822-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027400 | hsa-miR-6750-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025725 | gga-miR-6629-5p | 3 | ......_ | 8 | 85 |
| MIMAT0024590 | bta-miR-6120-5p | 8 | ......_ | 3 | 85 |
| MIMAT0023673 | ame-miR-6049 | 2 | _...... | 7 | 85 |
| MIMAT0023664 | ame-miR-6042 | 3 | _...... | 8 | 85 |
| MIMAT0021642 | gma-miR159f-5p | 8 | ......_ | 3 | 85 |
| MIMAT0021630 | gma-miR408b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027096 | bdi-miR395n-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027095 | bdi-miR395l-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027094 | bdi-miR395k-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027092 | bdi-miR395h-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027090 | bdi-miR395f-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027074 | bdi-miR395c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0022986 | mmu-miR-3572-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018042 | vvi-miR3633b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016527 | cin-miR-4019-3p | 8 | _...... | 3 | 85 |
| MIMAT0016484 | cin-miR-4006g-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016328 | ahy-miR408-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017667 | aly-miR395h-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017587 | aly-miR408-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017555 | aly-miR395f-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017549 | aly-miR395c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017547 | aly-miR395b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0014919 | mmu-miR-3100-5p | 3 | ......_ | 8 | 85 |
| MIMAT0014792 | api-miR-3051 | 3 | _...... | 8 | 85 |
| MIMAT0015348 | zma-miR395p-5p | 6 | ......_ | 1 | 85 |
| MIMAT0015342 | zma-miR395j-5p | 6 | ......_ | 1 | 85 |
| MIMAT0015341 | zma-miR395i-5p | 6 | ......_ | 1 | 85 |
| MIMAT0015340 | zma-miR395h-5p | 6 | ......_ | 1 | 85 |
| MIMAT0015337 | zma-miR395e-5p | 6 | ......_ | 1 | 85 |
| MIMAT0013969 | bhv1-miR-B7 | 8 | _...... | 3 | 85 |
| MIMAT0017380 | ssc-miR-450b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0013221 | eca-miR-450b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0009137 | osa-miR1320-5p | 2 | _...... | 7 | 85 |
| MIMAT0020934 | gma-miR159b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0007226 | oan-miR-1409-5p | 3 | ......_ | 8 | 85 |
| MIMAT0022913 | ptc-miR408-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015165 | zma-miR395c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0015164 | zma-miR395b-5p | 6 | ......_ | 1 | 85 |
