| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gggcgaag | 8 | ||
| MIMAT0033956 | esi-miR8621 | 8 | _....... | 2 | 87 |
| MIMAT0033759 | pxy-miR-8520-3p | 7 | _....... | 1 | 87 |
| MIMAT0018694 | tca-miR-3832-5p | 1 | ......._ | 7 | 87 |
| MIMAT0017579 | aly-miR399e-5p | 1 | ......._ | 7 | 87 |
| MIMAT0017577 | aly-miR399d-5p | 1 | ......._ | 7 | 87 |
| MIMAT0015354 | zma-miR398a-5p | 2 | ......._ | 8 | 87 |
| MIMAT0029793 | mmu-miR-6546-3p | 1 | .a...... | 8 | 87 |
| MIMAT0037299 | ame-miR-9894 | 3 | ......__ | 8 | 75 |
| MIMAT0035610 | dvi-miR-996-5p | 1 | _......_ | 6 | 75 |
| MIMAT0035230 | dme-miR-9383-3p | 6 | _......_ | 1 | 75 |
| MIMAT0034081 | gra-miR8700 | 2 | ......__ | 7 | 75 |
| MIMAT0031846 | cpa-miR8149 | 2 | __...... | 7 | 75 |
| MIMAT0031830 | cpa-miR8137 | 6 | _......_ | 1 | 75 |
| MIMAT0027477 | hsa-miR-6788-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027359 | hsa-miR-6729-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027354 | hsa-miR-6726-3p | 7 | ......__ | 2 | 75 |
| MIMAT0023275 | osa-miR5804 | 2 | __...... | 7 | 75 |
| MIMAT0023101 | tur-miR-5736a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0021566 | asu-miR-5353-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020758 | bdi-miR5201-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019711 | hsa-miR-4649-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014064 | rlcv-miR-rL1-17-3p | 8 | __...... | 3 | 75 |
| MIMAT0013679 | bmo-miR-2783 | 2 | ......__ | 7 | 75 |
| MIMAT0013610 | bmo-miR-279c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0009818 | nve-miR-2047-5p | 6 | _......_ | 1 | 75 |
| MIMAT0009410 | mmu-miR-1945 | 7 | __...... | 2 | 75 |
| MIMAT0007994 | ptr-miR-1273 | 1 | ......__ | 6 | 75 |
| MIMAT0007489 | gga-miR-1621-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005677 | vvi-miR169y | 3 | __...... | 8 | 75 |
| MIMAT0005926 | hsa-miR-1273a | 1 | ......__ | 6 | 75 |
| MIMAT0005249 | smo-miR1094c | 8 | __...... | 3 | 75 |
| MIMAT0017209 | mmu-miR-541-3p | 2 | _......_ | 7 | 75 |
| MIMAT0026553 | hcmv-miR-US5-2-5p | 8 | _......_ | 3 | 75 |
| MIMAT0020820 | dme-miR-286-5p | 1 | _......_ | 6 | 75 |
| MIMAT0020329 | cel-miR-233-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020318 | cel-miR-72-3p | 8 | __...... | 3 | 75 |
