| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gggcggtg | 8 | ||
| MIMAT0012715 | hvt-miR-H4-3p | 1 | ........ | 8 | 100 |
| MIMAT0034483 | eca-miR-8954 | 2 | _....... | 8 | 87 |
| MIMAT0029109 | gga-miR-7477-3p | 8 | ......._ | 2 | 87 |
| MIMAT0020149 | dme-miR-4941-3p | 1 | _....... | 7 | 87 |
| MIMAT0026431 | sbi-miR169d-3p | 1 | ......._ | 7 | 87 |
| MIMAT0034456 | eca-miR-8928 | 8 | ......a. | 1 | 87 |
| MIMAT0033748 | pxy-miR-8528a | 1 | ......c. | 8 | 87 |
| MIMAT0022191 | cel-miR-5550-5p | 8 | ......g. | 1 | 87 |
| MIMAT0037137 | ata-miR169c-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036998 | tae-miR9677b | 3 | ......__ | 8 | 75 |
| MIMAT0033075 | ppc-miR-8285-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032916 | ppc-miR-63j-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032833 | cel-miR-8208-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032779 | ath-miR8180 | 2 | __...... | 7 | 75 |
| MIMAT0031638 | bbe-miR-2071-3p | 3 | __...... | 8 | 75 |
| MIMAT0030534 | prd-miR-5358a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029105 | gga-miR-7475-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028797 | mdo-miR-7375-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028574 | mdo-miR-7295-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028262 | mml-miR-7165-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028114 | hsa-miR-7108-3p | 8 | ......__ | 3 | 75 |
| MIMAT0027532 | hsa-miR-6816-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027472 | hsa-miR-6786-5p | 1 | __...... | 6 | 75 |
| MIMAT0025740 | gga-miR-6642-3p | 2 | ......__ | 7 | 75 |
| MIMAT0024573 | bta-miR-3141 | 3 | ......__ | 8 | 75 |
| MIMAT0024229 | ggo-miR-1228 | 3 | ......__ | 8 | 75 |
| MIMAT0022824 | sha-miR-1549 | 8 | ......__ | 3 | 75 |
| MIMAT0023023 | bra-miR5724 | 7 | _......_ | 2 | 75 |
| MIMAT0021572 | asu-miR-5356a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020637 | mmu-miR-5126 | 3 | ......__ | 8 | 75 |
| MIMAT0019881 | hsa-miR-4746-3p | 2 | __...... | 7 | 75 |
| MIMAT0019688 | hsa-miR-4632-3p | 8 | ......__ | 3 | 75 |
| MIMAT0032116 | hsa-miR-4485-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018178 | hsa-miR-3180 | 3 | ......__ | 8 | 75 |
| MIMAT0016802 | cin-miR-4185-5p | 3 | __...... | 8 | 75 |
| MIMAT0016610 | cin-miR-4061-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017899 | rno-miR-3594-3p | 8 | __...... | 3 | 75 |
| MIMAT0015080 | hsa-miR-3196 | 3 | ......__ | 8 | 75 |
| MIMAT0015058 | hsa-miR-3180-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015010 | hsa-miR-3141 | 3 | ......__ | 8 | 75 |
| MIMAT0014696 | hsv1-miR-H18 | 7 | ......__ | 2 | 75 |
| MIMAT0015355 | zma-miR398b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0013858 | bta-miR-2900 | 2 | ......__ | 7 | 75 |
| MIMAT0013839 | bta-miR-2881 | 2 | ......__ | 7 | 75 |
| MIMAT0013641 | bmo-miR-2766-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012321 | dps-miR-2532 | 2 | ......__ | 7 | 75 |
| MIMAT0012046 | bta-miR-1777b | 3 | ......__ | 8 | 75 |
| MIMAT0012009 | bta-miR-2436-3p | 7 | ......__ | 2 | 75 |
| MIMAT0011965 | bta-miR-2407 | 3 | ......__ | 8 | 75 |
| MIMAT0019172 | bfl-miR-2071-5p | 3 | __...... | 8 | 75 |
| MIMAT0007870 | mmu-miR-1900 | 8 | ......__ | 3 | 75 |
| MIMAT0006774 | cel-miR-1832a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0026902 | mml-miR-598-5p | 1 | __...... | 6 | 75 |
| MIMAT0007688 | gga-miR-1777 | 3 | ......__ | 8 | 75 |
| MIMAT0007670 | gga-miR-1763 | 3 | ......__ | 8 | 75 |
| MIMAT0007567 | gga-miR-1680-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007492 | gga-miR-1624 | 7 | __...... | 2 | 75 |
| MIMAT0007473 | gga-miR-1607 | 3 | ......__ | 8 | 75 |
| MIMAT0006149 | mdo-miR-1549-3p | 8 | ......__ | 3 | 75 |
| MIMAT0007059 | oan-miR-181c-3p | 8 | __...... | 3 | 75 |
| MIMAT0005582 | hsa-miR-1228-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005324 | rno-miR-598-5p | 1 | __...... | 6 | 75 |
| MIMAT0017283 | mmu-miR-598-5p | 1 | __...... | 6 | 75 |
| MIMAT0026620 | hsa-miR-598-5p | 1 | __...... | 6 | 75 |
| MIMAT0020836 | dme-miR-310-5p | 2 | ......__ | 7 | 75 |
