| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggggatgg | 8 | ||
| MIMAT0028193 | dev-miR-D18-3p | 8 | ........ | 1 | 100 |
| MIMAT0003343 | hcmv-miR-UL70-3p | 1 | ........ | 8 | 100 |
| MIMAT0037280 | ame-miR-9876 | 2 | _....... | 8 | 87 |
| MIMAT0028616 | mdo-miR-7309-5p | 2 | _....... | 8 | 87 |
| MIMAT0028352 | mml-miR-7196-5p | 8 | _....... | 2 | 87 |
| MIMAT0027944 | mmu-miR-7020-5p | 2 | _....... | 8 | 87 |
| MIMAT0027360 | hsa-miR-6729-3p | 8 | ......._ | 2 | 87 |
| MIMAT0024369 | ppy-miR-1193 | 1 | _....... | 7 | 87 |
| MIMAT0024256 | ggo-miR-1193 | 1 | _....... | 7 | 87 |
| MIMAT0019269 | oar-miR-1193-5p | 1 | _....... | 7 | 87 |
| MIMAT0015049 | hsa-miR-1193 | 1 | _....... | 7 | 87 |
| MIMAT0014474 | tgu-miR-2954-3p | 7 | ......._ | 1 | 87 |
| MIMAT0014621 | tgu-miR-2962-3p | 7 | ......._ | 1 | 87 |
| MIMAT0014448 | gga-miR-2954 | 7 | ......._ | 1 | 87 |
| MIMAT0005209 | ppt-miR1077-3p | 2 | _....... | 8 | 87 |
| MIMAT0024873 | osa-miR6250 | 1 | ......a. | 8 | 87 |
| MIMAT0018681 | tca-miR-3826-3p | 8 | ......a. | 1 | 87 |
| MIMAT0037282 | ame-miR-9878 | 2 | _......_ | 7 | 75 |
| MIMAT0037279 | ame-miR-9875 | 3 | _......_ | 8 | 75 |
| MIMAT0037273 | ame-miR-9869 | 3 | ......__ | 8 | 75 |
| MIMAT0037188 | ata-miR408-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036596 | tch-miR-324-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036491 | tch-miR-188-5p | 6 | _......_ | 1 | 75 |
| MIMAT0036400 | gma-miR9763 | 8 | __...... | 3 | 75 |
| MIMAT0036272 | chi-miR-542-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036135 | chi-miR-324-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036013 | chi-miR-188-5p | 6 | _......_ | 1 | 75 |
| MIMAT0035443 | sly-miR166c-5p | 1 | _......_ | 6 | 75 |
| MIMAT0035424 | nve-miR-9465 | 3 | __...... | 8 | 75 |
| MIMAT0035228 | dme-miR-9382-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035179 | efu-miR-8915 | 2 | __...... | 7 | 75 |
| MIMAT0035151 | efu-miR-188 | 6 | _......_ | 1 | 75 |
| MIMAT0033716 | pxy-miR-8504 | 6 | __...... | 1 | 75 |
| MIMAT0033654 | sma-miR-8467-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032923 | ppc-miR-8234-3p | 8 | __...... | 3 | 75 |
| MIMAT0032850 | ppc-miR-2235b-5p | 6 | __...... | 1 | 75 |
| MIMAT0032774 | ath-miR8175 | 7 | ......__ | 2 | 75 |
| MIMAT0030996 | hsa-miR-8069 | 1 | __...... | 6 | 75 |
| MIMAT0030917 | stu-miR8001b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030228 | bdi-miR7744-5p | 2 | __...... | 7 | 75 |
| MIMAT0029663 | cbn-miR-789b | 6 | __...... | 1 | 75 |
| MIMAT0029594 | cbr-miR-7583c-3p | 6 | __...... | 1 | 75 |
| MIMAT0029586 | cbr-miR-7583b | 6 | __...... | 1 | 75 |
| MIMAT0029585 | cbr-miR-7583a-3p | 6 | __...... | 1 | 75 |
| MIMAT0029358 | lja-miR7533b | 3 | ......__ | 8 | 75 |
| MIMAT0029357 | lja-miR7533a | 3 | ......__ | 8 | 75 |
| MIMAT0028507 | mdo-miR-7268-3p | 2 | __...... | 7 | 75 |
| MIMAT0028446 | mmu-miR-7239-5p | 7 | __...... | 2 | 75 |
| MIMAT0026404 | sbi-miR6220-5p | 8 | __...... | 3 | 75 |
| MIMAT0026066 | mdm-miR171o | 2 | _......_ | 7 | 75 |
| MIMAT0027919 | mmu-miR-7007-3p | 7 | __...... | 2 | 75 |
| MIMAT0027756 | mmu-miR-6928-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027712 | mmu-miR-6906-5p | 3 | __...... | 8 | 75 |
| MIMAT0027614 | hsa-miR-6857-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027414 | hsa-miR-6757-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027357 | hsa-miR-6728-5p | 3 | _......_ | 8 | 75 |
| MIMAT0025862 | blv-miR-B3-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025597 | gga-miR-6547-5p | 3 | _......_ | 8 | 75 |
| MIMAT0025305 | prv-miR-LLT2 | 8 | _......_ | 3 | 75 |
| MIMAT0024867 | osa-miR6246 | 3 | ......__ | 8 | 75 |
| MIMAT0024277 | ggo-miR-188 | 6 | _......_ | 1 | 75 |
| MIMAT0024130 | ggo-miR-324 | 8 | _......_ | 3 | 75 |
| MIMAT0024037 | ptr-miR-2392 | 3 | __...... | 8 | 75 |
| MIMAT0023909 | cgr-miR-324-5p | 8 | _......_ | 3 | 75 |
| MIMAT0023897 | cgr-miR-30b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0023816 | cgr-miR-188 | 6 | _......_ | 1 | 75 |
| MIMAT0026462 | hhv6b-miR-Ro6-4-5p | 2 | __...... | 7 | 75 |
| MIMAT0022338 | cin-miR-5605-3p | 3 | __...... | 8 | 75 |
| MIMAT0022079 | aca-miR-5453 | 6 | ......__ | 1 | 75 |
| MIMAT0022037 | aca-miR-5417 | 7 | _......_ | 2 | 75 |
| MIMAT0021447 | asu-miR-36e-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021443 | asu-miR-36c-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021117 | hsa-miR-5187-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020550 | bdi-miR408-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021043 | hsa-miR-5010-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020138 | cel-miR-4932 | 1 | ......__ | 6 | 75 |
| MIMAT0019073 | hsa-miR-4534 | 1 | __...... | 6 | 75 |
| MIMAT0019064 | hsa-miR-4525 | 3 | ......__ | 8 | 75 |
| MIMAT0019043 | hsa-miR-2392 | 3 | __...... | 8 | 75 |
| MIMAT0018971 | hsa-miR-4450 | 2 | ......__ | 7 | 75 |
| MIMAT0018595 | ame-miR-3728 | 6 | __...... | 1 | 75 |
| MIMAT0016895 | hsa-miR-2355-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016054 | ppy-miR-613 | 2 | _......_ | 7 | 75 |
| MIMAT0015991 | ppy-miR-542-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015827 | ppy-miR-324-5p | 8 | _......_ | 3 | 75 |
| MIMAT0031032 | tgu-miR-92-2-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014484 | tgu-miR-2974 | 3 | _......_ | 8 | 75 |
| MIMAT0013957 | ssc-miR-324 | 8 | _......_ | 3 | 75 |
| MIMAT0017384 | ssc-miR-432-3p | 2 | __...... | 7 | 75 |
| MIMAT0013924 | ssc-miR-542-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013198 | eca-miR-188-5p | 6 | _......_ | 1 | 75 |
| MIMAT0013033 | eca-miR-324-5p | 8 | _......_ | 3 | 75 |
| MIMAT0012876 | hvt-miR-H11 | 1 | _......_ | 6 | 75 |
| MIMAT0013750 | bmo-miR-2836 | 6 | _......_ | 1 | 75 |
| MIMAT0013652 | bmo-miR-2770-3p | 8 | ......__ | 3 | 75 |
| MIMAT0013594 | bta-miR-542-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011982 | bta-miR-2418 | 2 | _......_ | 7 | 75 |
| MIMAT0011945 | bta-miR-2392 | 3 | __...... | 8 | 75 |
| MIMAT0011475 | cbr-miR-56-5p | 3 | ......__ | 8 | 75 |
| MIMAT0009896 | cfa-miR-324 | 8 | _......_ | 3 | 75 |
| MIMAT0009880 | cfa-miR-188 | 6 | _......_ | 1 | 75 |
| MIMAT0009285 | bta-miR-324 | 8 | _......_ | 3 | 75 |
| MIMAT0009249 | bta-miR-188 | 6 | _......_ | 1 | 75 |
| MIMAT0006406 | mml-miR-542-5p | 3 | ......__ | 8 | 75 |
| MIMAT0026874 | mml-miR-432-3p | 2 | __...... | 7 | 75 |
| MIMAT0006266 | mml-miR-324-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007635 | gga-miR-1733 | 3 | __...... | 8 | 75 |
| MIMAT0009181 | oan-miR-1421l-2-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007206 | oan-miR-1400-3p | 6 | _......_ | 1 | 75 |
| MIMAT0007116 | oan-miR-1380-5p | 7 | _......_ | 2 | 75 |
| MIMAT0009168 | oan-miR-1421n-2-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007085 | oan-miR-1421s-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007081 | oan-miR-1421q-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005301 | rno-miR-188-5p | 6 | _......_ | 1 | 75 |
| MIMAT0004060 | osa-miR815c | 3 | ......__ | 8 | 75 |
| MIMAT0004059 | osa-miR815b | 3 | ......__ | 8 | 75 |
| MIMAT0004058 | osa-miR815a | 3 | ......__ | 8 | 75 |
| MIMAT0003916 | ppt-miR1221-5p | 2 | __...... | 7 | 75 |
| MIMAT0003415 | ebv-miR-BART6-3p | 2 | ......__ | 7 | 75 |
| MIMAT0003340 | hsa-miR-542-5p | 3 | ......__ | 8 | 75 |
| MIMAT0002815 | hsa-miR-432-3p | 3 | __...... | 8 | 75 |
| MIMAT0002311 | ppa-miR-188 | 6 | _......_ | 1 | 75 |
| MIMAT0002310 | mne-miR-188 | 6 | _......_ | 1 | 75 |
| MIMAT0002309 | ppy-miR-188 | 6 | _......_ | 1 | 75 |
| MIMAT0002308 | ptr-miR-188 | 6 | _......_ | 1 | 75 |
| MIMAT0002307 | mml-miR-188-5p | 6 | _......_ | 1 | 75 |
| MIMAT0022884 | osa-miR408-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004721 | rno-miR-30b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000761 | hsa-miR-324-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000555 | mmu-miR-324-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000553 | rno-miR-324-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000457 | hsa-miR-188-5p | 6 | _......_ | 1 | 75 |
| MIMAT0000217 | mmu-miR-188-5p | 6 | _......_ | 1 | 75 |
| MIMAT0004524 | mmu-miR-30b-3p | 3 | _......_ | 8 | 75 |
