| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggggcaa | 7 | ||
| MIMAT0016707 | cin-miR-4116-5p | 1 | ....... | 7 | 100 |
| MIMAT0037209 | ata-miR169a-3p | 2 | _...... | 7 | 85 |
| MIMAT0037155 | ata-miR9772b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0037147 | ata-miR169b-3p | 2 | _...... | 7 | 85 |
| MIMAT0037143 | ata-miR169j-3p | 2 | _...... | 7 | 85 |
| MIMAT0037107 | ata-miR9772a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0037079 | ssc-miR-9860-5p | 6 | _...... | 1 | 85 |
| MIMAT0036539 | tch-miR-9771f | 8 | _...... | 3 | 85 |
| MIMAT0036136 | chi-miR-324-3p | 8 | ......_ | 3 | 85 |
| MIMAT0035023 | efu-miR-9318b | 1 | ......_ | 6 | 85 |
| MIMAT0034740 | eca-miR-9163 | 6 | ......_ | 1 | 85 |
| MIMAT0034481 | eca-miR-8952 | 6 | ......_ | 1 | 85 |
| MIMAT0034445 | eca-miR-8917 | 7 | _...... | 2 | 85 |
| MIMAT0034284 | cfa-miR-8794 | 6 | ......_ | 1 | 85 |
| MIMAT0033708 | pxy-miR-8498 | 3 | ......_ | 8 | 85 |
| MIMAT0033705 | pxy-miR-8495-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033406 | str-miR-7880u-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032978 | ppc-miR-8255-5p | 8 | ......_ | 3 | 85 |
| MIMAT0032326 | ssa-miR-130b-2-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031754 | bma-miR-5363 | 3 | _...... | 8 | 85 |
| MIMAT0031621 | bbe-miR-2061-3p | 1 | _...... | 6 | 85 |
| MIMAT0030302 | bdi-miR7776-5p.1 | 7 | _...... | 2 | 85 |
| MIMAT0029826 | mmu-miR-7660-5p | 7 | _...... | 2 | 85 |
| MIMAT0029676 | cbn-miR-7633 | 6 | _...... | 1 | 85 |
| MIMAT0029566 | ipu-miR-7567 | 6 | _...... | 1 | 85 |
| MIMAT0028540 | mdo-miR-7283-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028535 | mdo-miR-7280-3p | 8 | ......_ | 3 | 85 |
| MIMAT0026386 | bma-miR-5882b | 2 | _...... | 7 | 85 |
| MIMAT0027806 | mmu-miR-6953-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027694 | mmu-miR-6897-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027450 | hsa-miR-6775-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027387 | hsa-miR-6743-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025792 | gga-miR-6686-3p | 2 | _...... | 7 | 85 |
| MIMAT0025071 | rno-miR-3072 | 6 | ......_ | 1 | 85 |
| MIMAT0023893 | cgr-miR-3072-3p | 6 | ......_ | 1 | 85 |
| MIMAT0023340 | hco-miR-5896 | 3 | _...... | 8 | 85 |
| MIMAT0022649 | ola-miR-31 | 1 | _...... | 6 | 85 |
| MIMAT0027103 | hsa-miR-5699-5p | 6 | ......_ | 1 | 85 |
| MIMAT0022994 | gma-miR169l-3p | 2 | _...... | 7 | 85 |
| MIMAT0021588 | asu-miR-5363-5p | 3 | _...... | 8 | 85 |
| MIMAT0027052 | bdi-miR169k-3p | 1 | _...... | 6 | 85 |
| MIMAT0021082 | hsa-miR-5090 | 3 | ......_ | 8 | 85 |
| MIMAT0020003 | cel-miR-4814-3p | 2 | _...... | 7 | 85 |
| MIMAT0019904 | hsa-miR-4758-3p | 6 | ......_ | 1 | 85 |
| MIMAT0019777 | hsa-miR-4688 | 3 | ......_ | 8 | 85 |
| MIMAT0019657 | pma-miR-4623 | 2 | _...... | 7 | 85 |
| MIMAT0019654 | pma-miR-4620 | 3 | ......_ | 8 | 85 |
| MIMAT0019635 | pma-miR-4601 | 6 | ......_ | 1 | 85 |
| MIMAT0018481 | csi-miR482b | 8 | _...... | 3 | 85 |
| MIMAT0018219 | tae-miR169 | 1 | _...... | 6 | 85 |
| MIMAT0018800 | tca-miR-3862-5p | 2 | _...... | 7 | 85 |
| MIMAT0017832 | rno-miR-3562 | 3 | ......_ | 8 | 85 |
| MIMAT0016377 | gga-miR-3528 | 8 | ......_ | 3 | 85 |
| MIMAT0016241 | ppy-miR-1913 | 8 | ......_ | 3 | 85 |
| MIMAT0015828 | ppy-miR-324-3p | 8 | ......_ | 3 | 85 |
| MIMAT0017673 | aly-miR399i-5p | 1 | _...... | 6 | 85 |
| MIMAT0017671 | aly-miR399h-5p | 1 | _...... | 6 | 85 |
| MIMAT0017669 | aly-miR399g-5p | 1 | _...... | 6 | 85 |
| MIMAT0017581 | aly-miR399f-5p | 1 | _...... | 6 | 85 |
| MIMAT0019217 | hsa-miR-3189-5p | 6 | ......_ | 1 | 85 |
| MIMAT0014853 | mmu-miR-3072-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015356 | zma-miR399g-5p | 1 | _...... | 6 | 85 |
| MIMAT0013954 | ssc-miR-1285 | 3 | _...... | 8 | 85 |
| MIMAT0012207 | dme-miR-2496-3p | 3 | ......_ | 8 | 85 |
| MIMAT0011935 | bta-miR-2385-5p | 3 | ......_ | 8 | 85 |
| MIMAT0010068 | osa-miR2102-5p | 1 | _...... | 6 | 85 |
| MIMAT0008098 | ptr-miR-324 | 8 | ......_ | 3 | 85 |
| MIMAT0007888 | hsa-miR-1913 | 8 | ......_ | 3 | 85 |
| MIMAT0032036 | cfa-miR-486-3p | 3 | ......_ | 8 | 85 |
| MIMAT0006267 | mml-miR-324-3p | 8 | ......_ | 3 | 85 |
| MIMAT0007638 | gga-miR-1736-5p | 2 | _...... | 7 | 85 |
| MIMAT0007472 | gga-miR-1606 | 3 | ......_ | 8 | 85 |
| MIMAT0007421 | gga-miR-1562-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005411 | cre-miR1160.1 | 6 | _...... | 1 | 85 |
| MIMAT0004460 | mdv2-miR-M19-3p | 8 | ......_ | 3 | 85 |
| MIMAT0015174 | zma-miR399f-5p | 1 | _...... | 6 | 85 |
| MIMAT0000762 | hsa-miR-324-3p | 8 | ......_ | 3 | 85 |
| MIMAT0017030 | mmu-miR-328-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017029 | rno-miR-328a-5p | 3 | ......_ | 8 | 85 |
