| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggggcga | 7 | ||
| MIMAT0015354 | zma-miR398a-5p | 1 | ....... | 7 | 100 |
| MIMAT0037299 | ame-miR-9894 | 3 | _...... | 8 | 85 |
| MIMAT0034985 | efu-miR-4667 | 3 | ......_ | 8 | 85 |
| MIMAT0034081 | gra-miR8700 | 2 | _...... | 7 | 85 |
| MIMAT0034035 | gra-miR7486d | 3 | ......_ | 8 | 85 |
| MIMAT0033075 | ppc-miR-8285-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027838 | mmu-miR-6968-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027359 | hsa-miR-6729-5p | 2 | _...... | 7 | 85 |
| MIMAT0027354 | hsa-miR-6726-3p | 7 | _...... | 2 | 85 |
| MIMAT0023416 | hco-miR-5930 | 3 | ......_ | 8 | 85 |
| MIMAT0020758 | bdi-miR5201-3p | 2 | _...... | 7 | 85 |
| MIMAT0019886 | hsa-miR-4749-3p | 6 | ......_ | 1 | 85 |
| MIMAT0019791 | hsa-miR-4697-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019711 | hsa-miR-4649-5p | 2 | _...... | 7 | 85 |
| MIMAT0019022 | hsa-miR-4488 | 3 | ......_ | 8 | 85 |
| MIMAT0018694 | tca-miR-3832-5p | 1 | _...... | 6 | 85 |
| MIMAT0017579 | aly-miR399e-5p | 1 | _...... | 6 | 85 |
| MIMAT0017577 | aly-miR399d-5p | 1 | _...... | 6 | 85 |
| MIMAT0015055 | hsa-miR-3178 | 1 | ......_ | 6 | 85 |
| MIMAT0015355 | zma-miR398b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0013839 | bta-miR-2881 | 1 | ......_ | 6 | 85 |
| MIMAT0013679 | bmo-miR-2783 | 2 | _...... | 7 | 85 |
| MIMAT0013610 | bmo-miR-279c-5p | 1 | _...... | 6 | 85 |
| MIMAT0012171 | hbv-miR-B4 | 3 | ......_ | 8 | 85 |
| MIMAT0012032 | bta-miR-1777a | 3 | ......_ | 8 | 85 |
| MIMAT0012005 | bta-miR-2433 | 3 | ......_ | 8 | 85 |
| MIMAT0011856 | bta-miR-2327 | 3 | ......_ | 8 | 85 |
| MIMAT0007994 | ptr-miR-1273 | 1 | _...... | 6 | 85 |
| MIMAT0005926 | hsa-miR-1273a | 1 | _...... | 6 | 85 |
| MIMAT0022946 | hsa-miR-1237-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020329 | cel-miR-233-5p | 6 | _...... | 1 | 85 |
