| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gggggcga | 8 | ||
| MIMAT0034985 | efu-miR-4667 | 2 | ......._ | 8 | 87 |
| MIMAT0034035 | gra-miR7486d | 2 | ......._ | 8 | 87 |
| MIMAT0027838 | mmu-miR-6968-5p | 2 | ......._ | 8 | 87 |
| MIMAT0024864 | mmu-miR-6244 | 1 | ......._ | 7 | 87 |
| MIMAT0019791 | hsa-miR-4697-5p | 2 | ......._ | 8 | 87 |
| MIMAT0019022 | hsa-miR-4488 | 2 | ......._ | 8 | 87 |
| MIMAT0015354 | zma-miR398a-5p | 1 | _....... | 7 | 87 |
| MIMAT0012046 | bta-miR-1777b | 1 | ......._ | 7 | 87 |
| MIMAT0012032 | bta-miR-1777a | 2 | ......._ | 8 | 87 |
| MIMAT0012005 | bta-miR-2433 | 2 | ......._ | 8 | 87 |
| MIMAT0011856 | bta-miR-2327 | 2 | ......._ | 8 | 87 |
| MIMAT0022946 | hsa-miR-1237-5p | 2 | ......._ | 8 | 87 |
| MIMAT0037299 | ame-miR-9894 | 1 | .a...... | 8 | 87 |
| MIMAT0034525 | eca-miR-8988 | 8 | ......t. | 1 | 87 |
| MIMAT0024363 | ppy-miR-3943 | 8 | ......t. | 1 | 87 |
| MIMAT0024210 | ggo-miR-3943 | 8 | ......t. | 1 | 87 |
| MIMAT0024046 | ptr-miR-3943 | 8 | ......t. | 1 | 87 |
| MIMAT0018359 | hsa-miR-3943 | 8 | ......t. | 1 | 87 |
| MIMAT0037155 | ata-miR9772b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0037107 | ata-miR9772a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0034481 | eca-miR-8952 | 7 | ......__ | 2 | 75 |
| MIMAT0034081 | gra-miR8700 | 2 | __...... | 7 | 75 |
| MIMAT0033075 | ppc-miR-8285-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032317 | ssa-miR-128-4-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031374 | stu-miR384-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030710 | prd-miR-7931-5p | 1 | ......__ | 6 | 75 |
| MIMAT0030648 | prd-miR-7911b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030646 | prd-miR-7911a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030644 | prd-miR-7927b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030612 | prd-miR-7927d-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030610 | prd-miR-7927c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030546 | prd-miR-7927a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028704 | mdo-miR-7346-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028606 | mdo-miR-7306-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028071 | mmu-miR-7082-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028044 | mmu-miR-7069-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027694 | mmu-miR-6897-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027670 | hsa-miR-6885-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027596 | hsa-miR-6848-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027592 | hsa-miR-6846-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027532 | hsa-miR-6816-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027510 | hsa-miR-6805-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027359 | hsa-miR-6729-5p | 2 | __...... | 7 | 75 |
| MIMAT0027354 | hsa-miR-6726-3p | 7 | __...... | 2 | 75 |
| MIMAT0025311 | prv-miR-LLT8 | 3 | ......__ | 8 | 75 |
| MIMAT0025071 | rno-miR-3072 | 7 | ......__ | 2 | 75 |
| MIMAT0024152 | ggo-miR-4488 | 3 | ......__ | 8 | 75 |
| MIMAT0023893 | cgr-miR-3072-3p | 7 | ......__ | 2 | 75 |
| MIMAT0023416 | hco-miR-5930 | 3 | _......_ | 8 | 75 |
| MIMAT0021732 | aca-miR-128-5p | 1 | ......__ | 6 | 75 |
| MIMAT0020758 | bdi-miR5201-3p | 2 | __...... | 7 | 75 |
| MIMAT0019886 | hsa-miR-4749-3p | 6 | _......_ | 1 | 75 |
| MIMAT0019711 | hsa-miR-4649-5p | 2 | __...... | 7 | 75 |
| MIMAT0018178 | hsa-miR-3180 | 2 | _......_ | 7 | 75 |
| MIMAT0018694 | tca-miR-3832-5p | 1 | __...... | 6 | 75 |
| MIMAT0016865 | hsa-miR-4313 | 7 | ......__ | 2 | 75 |
| MIMAT0015650 | hsv2-miR-H5 | 3 | ......__ | 8 | 75 |
| MIMAT0017579 | aly-miR399e-5p | 1 | __...... | 6 | 75 |
| MIMAT0017577 | aly-miR399d-5p | 1 | __...... | 6 | 75 |
| MIMAT0015080 | hsa-miR-3196 | 2 | _......_ | 7 | 75 |
| MIMAT0015058 | hsa-miR-3180-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015055 | hsa-miR-3178 | 1 | _......_ | 6 | 75 |
| MIMAT0014939 | mmu-miR-3104-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014853 | mmu-miR-3072-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026977 | tgu-miR-128-2-5p | 1 | ......__ | 6 | 75 |
| MIMAT0015355 | zma-miR398b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0013839 | bta-miR-2881 | 1 | _......_ | 6 | 75 |
| MIMAT0013679 | bmo-miR-2783 | 2 | __...... | 7 | 75 |
| MIMAT0013610 | bmo-miR-279c-5p | 1 | __...... | 6 | 75 |
| MIMAT0012598 | hsv1-miR-H8-3p | 6 | ......__ | 1 | 75 |
| MIMAT0012171 | hbv-miR-B4 | 3 | _......_ | 8 | 75 |
| MIMAT0012035 | bta-miR-2454-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011857 | bta-miR-2328-5p | 6 | ......__ | 1 | 75 |
| MIMAT0007994 | ptr-miR-1273 | 1 | __...... | 6 | 75 |
| MIMAT0026814 | mml-miR-128b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007473 | gga-miR-1607 | 2 | _......_ | 7 | 75 |
| MIMAT0007472 | gga-miR-1606 | 2 | ......__ | 7 | 75 |
| MIMAT0007078 | oan-miR-1421p-5p | 2 | ......__ | 7 | 75 |
| MIMAT0005926 | hsa-miR-1273a | 1 | __...... | 6 | 75 |
| MIMAT0005545 | mcmv-miR-M23-2-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026662 | mdo-miR-128a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0026506 | gga-miR-128-2-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017119 | rno-miR-128-2-5p | 1 | ......__ | 6 | 75 |
| MIMAT0026486 | hsa-miR-328-5p | 3 | ......__ | 8 | 75 |
| MIMAT0031095 | hsa-miR-128-2-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017069 | mmu-miR-128-2-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017030 | mmu-miR-328-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017029 | rno-miR-328a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017028 | rno-miR-326-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017027 | mmu-miR-326-5p | 1 | ......__ | 6 | 75 |
| MIMAT0020329 | cel-miR-233-5p | 6 | __...... | 1 | 75 |
