| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggggggt | 7 | ||
| MIMAT0035711 | bhv5-miR-B14 | 2 | ....... | 8 | 100 |
| MIMAT0027404 | hsa-miR-6752-5p | 1 | ....... | 7 | 100 |
| MIMAT0015280 | hsv1-miR-H5-5p | 2 | ....... | 8 | 100 |
| MIMAT0015280 | hsv1-miR-H5-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009207 | mdv1-miR-M3-3p | 2 | ....... | 8 | 100 |
| MIMAT0035713 | bhv5-miR-B11 | 3 | _...... | 8 | 85 |
| MIMAT0034798 | efu-miR-9208 | 7 | _...... | 2 | 85 |
| MIMAT0033724 | pxy-miR-8507-5p | 1 | _...... | 6 | 85 |
| MIMAT0032780 | ath-miR8181 | 2 | _...... | 7 | 85 |
| MIMAT0030398 | ptc-miR7841 | 1 | _...... | 6 | 85 |
| MIMAT0028509 | mdo-miR-7269-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028509 | mdo-miR-7269-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028127 | mmu-miR-7115-5p | 3 | _...... | 8 | 85 |
| MIMAT0028117 | hsa-miR-7110-5p | 2 | _...... | 7 | 85 |
| MIMAT0028115 | hsa-miR-7109-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027916 | mmu-miR-7006-5p | 2 | _...... | 7 | 85 |
| MIMAT0027862 | mmu-miR-6980-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027760 | mmu-miR-6930-5p | 3 | _...... | 8 | 85 |
| MIMAT0027720 | mmu-miR-6910-5p | 2 | _...... | 7 | 85 |
| MIMAT0027718 | mmu-miR-6909-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027619 | hsa-miR-6859-3p | 8 | _...... | 3 | 85 |
| MIMAT0027586 | hsa-miR-6842-5p | 2 | _...... | 7 | 85 |
| MIMAT0027582 | hsa-miR-6840-5p | 6 | _...... | 1 | 85 |
| MIMAT0027570 | hsa-miR-6835-5p | 2 | _...... | 7 | 85 |
| MIMAT0027506 | hsa-miR-6803-5p | 3 | _...... | 8 | 85 |
| MIMAT0027497 | hsa-miR-6798-3p | 8 | _...... | 3 | 85 |
| MIMAT0027402 | hsa-miR-6751-5p | 3 | _...... | 8 | 85 |
| MIMAT0027365 | hsa-miR-6732-5p | 3 | _...... | 8 | 85 |
| MIMAT0025688 | gga-miR-6594-5p | 2 | _...... | 7 | 85 |
| MIMAT0025310 | prv-miR-LLT7 | 3 | ......_ | 8 | 85 |
| MIMAT0023987 | cgr-miR-615-5p | 1 | _...... | 6 | 85 |
| MIMAT0023146 | mtr-miR5759 | 3 | _...... | 8 | 85 |
| MIMAT0022017 | aca-miR-5404 | 6 | ......_ | 1 | 85 |
| MIMAT0019956 | hsa-miR-4787-5p | 3 | _...... | 8 | 85 |
| MIMAT0019700 | hsa-miR-4640-3p | 7 | _...... | 2 | 85 |
| MIMAT0019653 | pma-miR-4619 | 7 | _...... | 2 | 85 |
| MIMAT0019064 | hsa-miR-4525 | 1 | ......_ | 6 | 85 |
| MIMAT0018904 | tca-miR-3900-5p | 2 | _...... | 7 | 85 |
| MIMAT0018724 | tca-miR-3840-5p | 2 | _...... | 7 | 85 |
| MIMAT0018654 | tca-miR-3815-5p | 2 | _...... | 7 | 85 |
| MIMAT0016056 | ppy-miR-615-5p | 1 | _...... | 6 | 85 |
| MIMAT0015650 | hsv2-miR-H5 | 1 | ......_ | 6 | 85 |
| MIMAT0014050 | osa-miR2919 | 3 | ......_ | 8 | 85 |
| MIMAT0012976 | eca-miR-615-5p | 1 | _...... | 6 | 85 |
| MIMAT0012835 | rno-miR-615 | 1 | _...... | 6 | 85 |
| MIMAT0012002 | bta-miR-2431-3p | 7 | _...... | 2 | 85 |
| MIMAT0011855 | bta-miR-2326 | 6 | ......_ | 1 | 85 |
| MIMAT0011817 | bta-miR-2305 | 2 | _...... | 7 | 85 |
| MIMAT0009920 | cfa-miR-615 | 1 | _...... | 6 | 85 |
| MIMAT0009355 | bta-miR-615 | 1 | _...... | 6 | 85 |
| MIMAT0009069 | dya-miR-306-3p | 1 | _...... | 6 | 85 |
| MIMAT0008805 | dse-miR-306-3p | 1 | _...... | 6 | 85 |
| MIMAT0008495 | der-miR-306-3p | 1 | _...... | 6 | 85 |
| MIMAT0006465 | mml-miR-615-5p | 1 | _...... | 6 | 85 |
| MIMAT0006975 | oan-miR-1421g-5p | 2 | _...... | 7 | 85 |
| MIMAT0004837 | mmu-miR-615-5p | 1 | _...... | 6 | 85 |
| MIMAT0004804 | hsa-miR-615-5p | 1 | _...... | 6 | 85 |
| MIMAT0026512 | gga-miR-30b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026486 | hsa-miR-328-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017030 | mmu-miR-328-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017029 | rno-miR-328a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0000394 | dme-miR-306-3p | 1 | _...... | 6 | 85 |
