| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggggtac | 7 | ||
| MIMAT0035381 | nve-miR-2041b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028739 | mdo-miR-7363-3p | 6 | _...... | 1 | 85 |
| MIMAT0027720 | mmu-miR-6910-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027584 | hsa-miR-6841-5p | 3 | _...... | 8 | 85 |
| MIMAT0027570 | hsa-miR-6835-5p | 3 | ......_ | 8 | 85 |
| MIMAT0023684 | ame-miR-6060 | 3 | _...... | 8 | 85 |
| MIMAT0023371 | hco-miR-5890b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0023325 | hco-miR-5890a | 6 | ......_ | 1 | 85 |
| MIMAT0023316 | hco-miR-5884 | 3 | _...... | 8 | 85 |
| MIMAT0023075 | tur-miR-5734-3p | 3 | ......_ | 8 | 85 |
| MIMAT0023060 | tur-miR-317-5p | 2 | _...... | 7 | 85 |
| MIMAT0021055 | gma-miR5034 | 7 | _...... | 2 | 85 |
| MIMAT0020498 | bfl-miR-4903 | 6 | ......_ | 1 | 85 |
| MIMAT0019622 | pma-miR-4589 | 3 | ......_ | 8 | 85 |
| MIMAT0018724 | tca-miR-3840-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018654 | tca-miR-3815-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018170 | mghv-miR-M1-12-5p | 3 | _...... | 8 | 85 |
| MIMAT0016160 | ppy-miR-1225-5p | 3 | _...... | 8 | 85 |
| MIMAT0013302 | mtr-miR2599 | 2 | _...... | 7 | 85 |
| MIMAT0011729 | ppc-miR-2272 | 3 | _...... | 8 | 85 |
| MIMAT0011704 | ppc-miR-2267 | 3 | _...... | 8 | 85 |
| MIMAT0011384 | sbi-miR529 | 8 | _...... | 3 | 85 |
| MIMAT0007023 | oan-miR-1362-5p | 6 | ......_ | 1 | 85 |
| MIMAT0005574 | mml-miR-1225-5p | 3 | _...... | 8 | 85 |
| MIMAT0005572 | hsa-miR-1225-5p | 3 | _...... | 8 | 85 |
| MIMAT0017326 | mmu-miR-1b-3p | 2 | _...... | 7 | 85 |
| MIMAT0020861 | dme-miR-965-5p | 1 | ......_ | 6 | 85 |
| MIMAT0002885 | osa-miR529a | 8 | _...... | 3 | 85 |
| MIMAT0022925 | hsa-miR-503-3p | 1 | ......_ | 6 | 85 |
| MIMAT0015170 | zma-miR399c-5p | 1 | _...... | 6 | 85 |
