| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gggtttg | 7 | ||
| MIMAT0033761 | pxy-miR-6497 | 1 | ....... | 7 | 100 |
| MIMAT0033432 | str-miR-8386-5p | 2 | ....... | 8 | 100 |
| MIMAT0027443 | hsa-miR-6771-3p | 7 | ....... | 1 | 100 |
| MIMAT0023418 | hco-miR-5904c | 7 | ....... | 1 | 100 |
| MIMAT0021079 | hsa-miR-5087 | 1 | ....... | 7 | 100 |
| MIMAT0019629 | pma-miR-4596 | 1 | ....... | 7 | 100 |
| MIMAT0013557 | cte-miR-2696 | 2 | ....... | 8 | 100 |
| MIMAT0036260 | chi-miR-497-3p | 8 | _...... | 3 | 85 |
| MIMAT0036027 | chi-miR-193b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035100 | efu-miR-193b | 3 | ......_ | 8 | 85 |
| MIMAT0034944 | efu-miR-99a | 6 | ......_ | 1 | 85 |
| MIMAT0034723 | eca-miR-9147 | 3 | _...... | 8 | 85 |
| MIMAT0033765 | pxy-miR-8524-5p | 3 | ......_ | 8 | 85 |
| MIMAT0033724 | pxy-miR-8507-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032444 | ssa-miR-192b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0030931 | stu-miR8008b | 6 | ......_ | 1 | 85 |
| MIMAT0030786 | prd-miR-124-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030590 | prd-miR-7880c-5p | 2 | _...... | 7 | 85 |
| MIMAT0030197 | bdi-miR7731-3p | 2 | _...... | 7 | 85 |
| MIMAT0030087 | bdi-miR166h-5p | 1 | _...... | 6 | 85 |
| MIMAT0029877 | mmu-miR-6715-3p | 7 | _...... | 2 | 85 |
| MIMAT0028769 | mdo-miR-15c-3p | 6 | _...... | 1 | 85 |
| MIMAT0028729 | mdo-miR-7358-3p | 2 | _...... | 7 | 85 |
| MIMAT0028652 | mdo-miR-193b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028517 | mdo-miR-7272-3p | 7 | _...... | 2 | 85 |
| MIMAT0028283 | mml-miR-7172-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028196 | dev-miR-D21-5p | 2 | _...... | 7 | 85 |
| MIMAT0027959 | mmu-miR-7027-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027897 | mmu-miR-6997-3p | 7 | _...... | 2 | 85 |
| MIMAT0027581 | hsa-miR-6839-3p | 3 | ......_ | 8 | 85 |
| MIMAT0025843 | hsa-miR-6715b-3p | 8 | _...... | 3 | 85 |
| MIMAT0025841 | hsa-miR-6715a-3p | 7 | _...... | 2 | 85 |
| MIMAT0025531 | bta-miR-2285n | 8 | ......_ | 3 | 85 |
| MIMAT0025530 | bta-miR-2285o | 6 | ......_ | 1 | 85 |
| MIMAT0024492 | mse-miR-2788 | 3 | ......_ | 8 | 85 |
| MIMAT0024138 | ggo-miR-193b | 3 | ......_ | 8 | 85 |
| MIMAT0023971 | cgr-miR-497-3p | 6 | _...... | 1 | 85 |
| MIMAT0023825 | cgr-miR-193b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0023373 | hco-miR-5904b | 8 | ......_ | 3 | 85 |
| MIMAT0022268 | hsa-miR-548as-3p | 8 | ......_ | 3 | 85 |
| MIMAT0021589 | asu-miR-5363-3p | 3 | _...... | 8 | 85 |
| MIMAT0021470 | asu-miR-76-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020536 | hme-miR-2788-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020134 | cel-miR-4927 | 3 | ......_ | 8 | 85 |
| MIMAT0019884 | hsa-miR-4748 | 3 | _...... | 8 | 85 |
| MIMAT0019530 | pma-miR-218a-3p | 3 | _...... | 8 | 85 |
| MIMAT0018988 | hsa-miR-4464 | 3 | _...... | 8 | 85 |
| MIMAT0018869 | tca-miR-3885-3p | 1 | ......_ | 6 | 85 |
| MIMAT0018863 | tca-miR-3883-3p | 8 | _...... | 3 | 85 |
| MIMAT0018798 | tca-miR-2788-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018712 | tca-miR-2796-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018045 | vvi-miR3636-5p | 3 | _...... | 8 | 85 |
| MIMAT0015581 | bmo-miR-3385-5p | 8 | _...... | 3 | 85 |
| MIMAT0014775 | api-miR-3038 | 3 | ......_ | 8 | 85 |
| MIMAT0027014 | tgu-miR-193a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012874 | hvt-miR-H18-5p | 8 | _...... | 3 | 85 |
| MIMAT0026946 | mdo-miR-497-3p | 6 | _...... | 1 | 85 |
| MIMAT0013696 | bmo-miR-2796-5p | 3 | ......_ | 8 | 85 |
| MIMAT0013685 | bmo-miR-2788 | 3 | ......_ | 8 | 85 |
| MIMAT0013468 | mtr-miR2661 | 3 | _...... | 8 | 85 |
| MIMAT0011823 | bta-miR-1603 | 3 | _...... | 8 | 85 |
| MIMAT0010083 | gma-miR2107 | 6 | _...... | 1 | 85 |
| MIMAT0010061 | osa-miR2098-3p | 2 | _...... | 7 | 85 |
| MIMAT0009352 | bta-miR-584 | 2 | _...... | 7 | 85 |
| MIMAT0006699 | cfa-miR-193b | 3 | ......_ | 8 | 85 |
| MIMAT0006467 | mml-miR-616 | 6 | ......_ | 1 | 85 |
| MIMAT0026887 | mml-miR-497-3p | 6 | _...... | 1 | 85 |
| MIMAT0026836 | mml-miR-193b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026774 | gga-miR-1555-5p | 8 | _...... | 3 | 85 |
| MIMAT0015254 | cin-miR-92b-5p | 2 | _...... | 7 | 85 |
| MIMAT0006820 | oan-miR-193-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017271 | mmu-miR-193b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017247 | mmu-miR-497a-3p | 6 | _...... | 1 | 85 |
| MIMAT0017230 | rno-miR-497-3p | 7 | _...... | 2 | 85 |
| MIMAT0026629 | gga-miR-193b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0004768 | hsa-miR-497-3p | 6 | _...... | 1 | 85 |
| MIMAT0004767 | hsa-miR-193b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015185 | zma-miR166j-5p | 1 | _...... | 6 | 85 |
| MIMAT0022870 | osa-miR166k-5p | 1 | _...... | 6 | 85 |
