| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggtcgtgg | 8 | ||
| MIMAT0005553 | mcmv-miR-M95-1-5p | 1 | ........ | 8 | 100 |
| MIMAT0035790 | tae-miR9672a-3p | 7 | _....... | 1 | 87 |
| MIMAT0031719 | bbe-miR-92a-5p | 2 | ......._ | 8 | 87 |
| MIMAT0018958 | hsa-miR-4440 | 2 | _....... | 8 | 87 |
| MIMAT0018786 | tca-miR-92c-5p | 2 | ......._ | 8 | 87 |
| MIMAT0016423 | cin-miR-92d-5p | 1 | ......._ | 7 | 87 |
| MIMAT0015594 | bmo-miR-3391-5p | 2 | ......._ | 8 | 87 |
| MIMAT0014321 | aae-miR-92b-5p | 2 | ......._ | 8 | 87 |
| MIMAT0032085 | dvi-miR-92b-5p | 2 | ......._ | 8 | 87 |
| MIMAT0019112 | tca-miR-92b-5p | 2 | ......._ | 8 | 87 |
| MIMAT0037129 | ata-miR9672-3p | 8 | __...... | 3 | 75 |
| MIMAT0036984 | tae-miR9672b | 8 | __...... | 3 | 75 |
| MIMAT0034880 | efu-miR-9260 | 1 | _......_ | 6 | 75 |
| MIMAT0033480 | str-miR-8395-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032657 | ssa-miR-489-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031551 | ppe-miR8128-3p | 1 | __...... | 6 | 75 |
| MIMAT0030889 | stu-miR7999-3p | 6 | ......__ | 1 | 75 |
| MIMAT0023465 | hco-miR-5961 | 7 | __...... | 2 | 75 |
| MIMAT0023432 | hco-miR-5937 | 3 | __...... | 8 | 75 |
| MIMAT0023265 | osa-miR5797 | 1 | __...... | 6 | 75 |
| MIMAT0021974 | aca-miR-489-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020226 | dme-miR-4987-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019523 | pma-miR-212-5p | 2 | _......_ | 7 | 75 |
| MIMAT0018323 | gma-miR4404 | 3 | __...... | 8 | 75 |
| MIMAT0018249 | gma-miR4357 | 3 | _......_ | 8 | 75 |
| MIMAT0018590 | ame-miR-3724 | 2 | __...... | 7 | 75 |
| MIMAT0018101 | hsa-miR-3677-3p | 2 | __...... | 7 | 75 |
| MIMAT0017907 | aly-miR841 | 7 | ......__ | 2 | 75 |
| MIMAT0016153 | ppy-miR-1204 | 1 | __...... | 6 | 75 |
| MIMAT0015578 | bmo-miR-3383-3p | 6 | __...... | 1 | 75 |
| MIMAT0027024 | tgu-miR-489-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014057 | osa-miR2926 | 2 | ......__ | 7 | 75 |
| MIMAT0013003 | eca-miR-1204 | 1 | __...... | 6 | 75 |
| MIMAT0012897 | eca-miR-1905a | 8 | __...... | 3 | 75 |
| MIMAT0007958 | ptr-miR-1204 | 1 | __...... | 6 | 75 |
| MIMAT0026883 | mml-miR-489-5p | 1 | ......__ | 6 | 75 |
| MIMAT0005868 | hsa-miR-1204 | 1 | __...... | 6 | 75 |
| MIMAT0026632 | gga-miR-489-5p | 2 | ......__ | 7 | 75 |
| MIMAT0026605 | hsa-miR-489-5p | 1 | ......__ | 6 | 75 |
| MIMAT0004757 | hsa-miR-431-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004753 | mmu-miR-431-3p | 3 | ......__ | 8 | 75 |
