| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggtggtgg | 8 | ||
| MIMAT0036685 | oha-miR-1306-5p | 7 | ......._ | 1 | 87 |
| MIMAT0035050 | efu-miR-9323 | 8 | ......._ | 2 | 87 |
| MIMAT0031614 | bbe-miR-2057-3p | 2 | ......._ | 8 | 87 |
| MIMAT0028474 | mdo-miR-7254-5p | 8 | ......._ | 2 | 87 |
| MIMAT0025822 | gga-miR-6712-5p | 2 | _....... | 8 | 87 |
| MIMAT0018899 | tca-miR-3897-3p | 2 | _....... | 8 | 87 |
| MIMAT0018521 | ame-miR-3751 | 2 | ......._ | 8 | 87 |
| MIMAT0014934 | mmu-miR-3102-5p.2-5p | 1 | ......._ | 7 | 87 |
| MIMAT0013122 | eca-miR-876-3p | 2 | ......._ | 8 | 87 |
| MIMAT0013122 | eca-miR-876-3p | 1 | __...... | 6 | 75 |
| MIMAT0012985 | eca-miR-1905c | 7 | ......._ | 1 | 87 |
| MIMAT0012985 | eca-miR-1905c | 8 | __...... | 3 | 75 |
| MIMAT0019136 | mmu-miR-1306-5p | 7 | ......._ | 1 | 87 |
| MIMAT0007410 | gga-miR-1553-3p | 2 | _....... | 8 | 87 |
| MIMAT0027453 | hsa-miR-6776-3p | 8 | ......t. | 1 | 87 |
| MIMAT0020602 | hsa-miR-1273g-5p | 1 | ......t. | 8 | 87 |
| MIMAT0006644 | cfa-miR-1838 | 8 | .c...... | 1 | 87 |
| MIMAT0017190 | mghv-miR-M1-6-5p | 8 | ......t. | 1 | 87 |
| MIMAT0037293 | ame-miR-9888 | 1 | __...... | 6 | 75 |
| MIMAT0037293 | ame-miR-9888 | 2 | ......__ | 7 | 75 |
| MIMAT0036774 | oha-miR-1905 | 6 | _......_ | 1 | 75 |
| MIMAT0036758 | oha-miR-181a-1-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036299 | chi-miR-876-3p | 1 | __...... | 6 | 75 |
| MIMAT0036299 | chi-miR-876-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036035 | chi-miR-197-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035732 | rno-miR-1896 | 1 | __...... | 6 | 75 |
| MIMAT0035355 | gsa-miR-9403-3p | 2 | _......_ | 7 | 75 |
| MIMAT0035351 | gsa-miR-9401-3p | 3 | __...... | 8 | 75 |
| MIMAT0035181 | efu-miR-9364 | 7 | _......_ | 2 | 75 |
| MIMAT0035144 | efu-miR-9186i | 1 | __...... | 6 | 75 |
| MIMAT0035008 | efu-miR-181f | 6 | ......__ | 1 | 75 |
| MIMAT0034526 | eca-miR-8989 | 2 | __...... | 7 | 75 |
| MIMAT0034189 | gra-miR8759 | 1 | __...... | 6 | 75 |
| MIMAT0033868 | atr-miR8583 | 7 | _......_ | 2 | 75 |
| MIMAT0033067 | ppc-miR-8282a-5p | 6 | __...... | 1 | 75 |
| MIMAT0031404 | mmu-miR-497b | 6 | _......_ | 1 | 75 |
| MIMAT0029868 | mmu-miR-7677-5p | 2 | _......_ | 7 | 75 |
| MIMAT0029823 | mmu-miR-7658-3p | 6 | ......__ | 1 | 75 |
| MIMAT0029339 | lja-miR7523b | 6 | ......__ | 1 | 75 |
| MIMAT0029338 | lja-miR7523a | 6 | ......__ | 1 | 75 |
| MIMAT0029089 | gga-miR-7467-3p | 6 | _......_ | 1 | 75 |
| MIMAT0029040 | gga-miR-7443-5p | 1 | __...... | 6 | 75 |
| MIMAT0028777 | mdo-miR-7372-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028559 | mdo-miR-7288-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028277 | mml-miR-7171-3p | 1 | __...... | 6 | 75 |
| MIMAT0028040 | mmu-miR-6769b-5p | 3 | __...... | 8 | 75 |
| MIMAT0027992 | mmu-miR-7044-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027804 | mmu-miR-6952-5p | 2 | __...... | 7 | 75 |
| MIMAT0027768 | mmu-miR-6934-5p | 2 | __...... | 7 | 75 |
| MIMAT0027660 | hsa-miR-6880-5p | 1 | __...... | 6 | 75 |
| MIMAT0027620 | hsa-miR-6769b-5p | 1 | __...... | 6 | 75 |
| MIMAT0025743 | gga-miR-6646-3p | 3 | __...... | 8 | 75 |
| MIMAT0024796 | hbr-miR6175 | 1 | __...... | 6 | 75 |
| MIMAT0024238 | ggo-miR-654 | 1 | __...... | 6 | 75 |
| MIMAT0024180 | ggo-miR-197 | 8 | _......_ | 3 | 75 |
| MIMAT0022443 | ath-miR5665 | 2 | __...... | 7 | 75 |
| MIMAT0022434 | ath-miR5660 | 3 | ......__ | 8 | 75 |
| MIMAT0022371 | mmu-miR-5622-5p | 8 | _......_ | 3 | 75 |
| MIMAT0022328 | cin-miR-5596b-3p | 2 | __...... | 7 | 75 |
| MIMAT0022165 | osa-miR5530 | 2 | _......_ | 7 | 75 |
| MIMAT0021683 | sbi-miR5385 | 6 | ......__ | 1 | 75 |
| MIMAT0021683 | sbi-miR5385 | 7 | __...... | 2 | 75 |
| MIMAT0020710 | bdi-miR166g-3p | 2 | _......_ | 7 | 75 |
| MIMAT0020161 | dme-miR-4949-3p | 2 | _......_ | 7 | 75 |
| MIMAT0019858 | hsa-miR-4733-3p | 6 | __...... | 1 | 75 |
| MIMAT0019324 | oar-miR-541-3p | 1 | __...... | 6 | 75 |
| MIMAT0019259 | oar-miR-323a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019017 | hsa-miR-4483 | 3 | ......__ | 8 | 75 |
| MIMAT0018978 | hsa-miR-4456 | 3 | __...... | 8 | 75 |
| MIMAT0018882 | tca-miR-3791-5p | 2 | ......__ | 7 | 75 |
| MIMAT0018540 | ame-miR-3766 | 3 | ......__ | 8 | 75 |
| MIMAT0016734 | cin-miR-4137-3p | 1 | ......__ | 6 | 75 |
| MIMAT0016976 | cin-miR-4014-2-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016391 | gga-miR-3540 | 2 | __...... | 7 | 75 |
| MIMAT0016215 | ppy-miR-1293 | 3 | ......__ | 8 | 75 |
| MIMAT0016116 | ppy-miR-876-3p | 1 | __...... | 6 | 75 |
| MIMAT0016116 | ppy-miR-876-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016087 | ppy-miR-654-5p | 1 | __...... | 6 | 75 |
| MIMAT0015990 | ppy-miR-541 | 1 | __...... | 6 | 75 |
| MIMAT0015825 | ppy-miR-323-5p | 2 | ......__ | 7 | 75 |
| MIMAT0015463 | bmo-miR-3278 | 2 | __...... | 7 | 75 |
| MIMAT0015463 | bmo-miR-3278 | 3 | ......__ | 8 | 75 |
| MIMAT0014672 | hma-miR-3005 | 2 | __...... | 7 | 75 |
| MIMAT0014434 | cqu-miR-2941-1-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013856 | bta-miR-2898 | 1 | __...... | 6 | 75 |
| MIMAT0013174 | eca-miR-770-5p | 8 | _......_ | 3 | 75 |
| MIMAT0013168 | eca-miR-541 | 1 | __...... | 6 | 75 |
| MIMAT0013131 | eca-miR-323-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012959 | eca-miR-197 | 8 | _......_ | 3 | 75 |
| MIMAT0012897 | eca-miR-1905a | 6 | _......_ | 1 | 75 |
| MIMAT0026951 | mml-miR-541-3p | 1 | __...... | 6 | 75 |
| MIMAT0013712 | bmo-miR-2808a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0013671 | bmo-miR-2808c | 1 | __...... | 6 | 75 |
| MIMAT0013671 | bmo-miR-2808c | 2 | ......__ | 7 | 75 |
| MIMAT0012356 | dps-miR-2548-5p | 1 | __...... | 6 | 75 |
| MIMAT0009754 | aqu-miR-2021-3p | 1 | __...... | 6 | 75 |
| MIMAT0009754 | aqu-miR-2021-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017350 | mmu-miR-1968-3p | 6 | ......__ | 1 | 75 |
| MIMAT0009343 | bta-miR-541 | 1 | __...... | 6 | 75 |
| MIMAT0009257 | bta-miR-197 | 8 | _......_ | 3 | 75 |
| MIMAT0008327 | ptr-miR-876 | 1 | __...... | 6 | 75 |
| MIMAT0008327 | ptr-miR-876 | 2 | ......__ | 7 | 75 |
| MIMAT0008012 | ptr-miR-1293 | 3 | ......__ | 8 | 75 |
| MIMAT0006698 | cfa-miR-197 | 8 | _......_ | 3 | 75 |
| MIMAT0006520 | mml-miR-876-3p | 1 | __...... | 6 | 75 |
| MIMAT0006520 | mml-miR-876-3p | 2 | ......__ | 7 | 75 |
| MIMAT0006495 | mml-miR-654-5p | 1 | __...... | 6 | 75 |
| MIMAT0006264 | mml-miR-323a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0006230 | mml-miR-197-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007457 | gga-miR-1594 | 1 | __...... | 6 | 75 |
| MIMAT0026763 | gga-miR-1306-5p | 6 | ......__ | 1 | 75 |
| MIMAT0007084 | oan-miR-1421s-5p | 2 | ......__ | 7 | 75 |
| MIMAT0007080 | oan-miR-1421q-5p | 2 | ......__ | 7 | 75 |
| MIMAT0007074 | oan-miR-1421n-5p | 2 | ......__ | 7 | 75 |
| MIMAT0005883 | hsa-miR-1293 | 3 | ......__ | 8 | 75 |
| MIMAT0005338 | rno-miR-770-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005166 | ppt-miR1050 | 8 | ......__ | 3 | 75 |
| MIMAT0005147 | ppt-miR1038-3p | 3 | __...... | 8 | 75 |
| MIMAT0004925 | hsa-miR-876-3p | 1 | __...... | 6 | 75 |
| MIMAT0004925 | hsa-miR-876-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004920 | hsa-miR-541-3p | 1 | __...... | 6 | 75 |
| MIMAT0004240 | ath-miR823 | 3 | ......__ | 8 | 75 |
| MIMAT0004822 | mmu-miR-770-5p | 8 | _......_ | 3 | 75 |
| MIMAT0003433 | rlcv-miR-rL1-5-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003431 | rlcv-miR-rL1-4-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003411 | ebv-miR-BART3-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003330 | hsa-miR-654-5p | 1 | __...... | 6 | 75 |
| MIMAT0003166 | mmu-miR-546 | 2 | __...... | 7 | 75 |
| MIMAT0002604 | ppa-miR-197 | 8 | _......_ | 3 | 75 |
| MIMAT0002603 | age-miR-197 | 8 | _......_ | 3 | 75 |
| MIMAT0002602 | mne-miR-197 | 8 | _......_ | 3 | 75 |
| MIMAT0002601 | ppy-miR-197 | 8 | _......_ | 3 | 75 |
| MIMAT0002600 | ptr-miR-197 | 8 | _......_ | 3 | 75 |
| MIMAT0017138 | rno-miR-181a-2-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017138 | rno-miR-181a-2-3p | 7 | __...... | 2 | 75 |
| MIMAT0004696 | hsa-miR-323a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004638 | mmu-miR-323-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004637 | rno-miR-323-5p | 2 | ......__ | 7 | 75 |
| MIMAT0000227 | hsa-miR-197-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020770 | cel-miR-41-5p | 1 | ......__ | 6 | 75 |
