| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggtgttg | 7 | ||
| MIMAT0034477 | eca-miR-8948 | 2 | ....... | 8 | 100 |
| MIMAT0026573 | mml-miR-21-3p | 7 | ....... | 1 | 100 |
| MIMAT0002180 | kshv-miR-K12-10b | 2 | ....... | 8 | 100 |
| MIMAT0004494 | hsa-miR-21-3p | 7 | ....... | 1 | 100 |
| MIMAT0037226 | ata-miR2275c-5p | 2 | _...... | 7 | 85 |
| MIMAT0036362 | gma-miR9742 | 2 | _...... | 7 | 85 |
| MIMAT0036269 | chi-miR-505-3p | 7 | _...... | 2 | 85 |
| MIMAT0035592 | dvi-miR-971-3p | 3 | ......_ | 8 | 85 |
| MIMAT0034986 | efu-miR-9312 | 6 | ......_ | 1 | 85 |
| MIMAT0034876 | efu-miR-9257 | 3 | ......_ | 8 | 85 |
| MIMAT0034273 | psj-miR8788b-3p | 1 | _...... | 6 | 85 |
| MIMAT0034271 | psj-miR8788a-3p | 1 | _...... | 6 | 85 |
| MIMAT0032781 | ath-miR8182 | 3 | _...... | 8 | 85 |
| MIMAT0031861 | lus-miR398f | 1 | ......_ | 6 | 85 |
| MIMAT0030572 | prd-miR-5358b-5p | 3 | _...... | 8 | 85 |
| MIMAT0028663 | mdo-miR-505-3p | 8 | _...... | 3 | 85 |
| MIMAT0025627 | gga-miR-6560-5p | 2 | _...... | 7 | 85 |
| MIMAT0025103 | mmu-miR-6360 | 3 | _...... | 8 | 85 |
| MIMAT0024998 | hme-miR-971 | 3 | ......_ | 8 | 85 |
| MIMAT0024301 | ggo-miR-609 | 3 | ......_ | 8 | 85 |
| MIMAT0024228 | ggo-miR-505 | 8 | _...... | 3 | 85 |
| MIMAT0023980 | cgr-miR-505-3p | 8 | _...... | 3 | 85 |
| MIMAT0023403 | hco-miR-5924a-5p | 6 | _...... | 1 | 85 |
| MIMAT0023191 | gma-miR5785 | 3 | _...... | 8 | 85 |
| MIMAT0022122 | osa-miR5489 | 3 | ......_ | 8 | 85 |
| MIMAT0021570 | asu-miR-5355-5p | 8 | ......_ | 3 | 85 |
| MIMAT0020519 | ath-miR5015 | 3 | ......_ | 8 | 85 |
| MIMAT0021005 | gma-miR1507c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020202 | dme-miR-4973-3p | 8 | _...... | 3 | 85 |
| MIMAT0020033 | sko-miR-4826-3p | 8 | _...... | 3 | 85 |
| MIMAT0018229 | gma-miR4341 | 2 | _...... | 7 | 85 |
| MIMAT0018730 | tca-miR-279c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018544 | ame-miR-971 | 3 | ......_ | 8 | 85 |
| MIMAT0016937 | bta-miR-3602 | 1 | _...... | 6 | 85 |
| MIMAT0016713 | cin-miR-4121-3p | 1 | _...... | 6 | 85 |
| MIMAT0016670 | cin-miR-4092-5p | 2 | _...... | 7 | 85 |
| MIMAT0016641 | cin-miR-4076-3p | 1 | ......_ | 6 | 85 |
| MIMAT0016614 | cin-miR-4063-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017895 | rno-miR-3592 | 3 | _...... | 8 | 85 |
| MIMAT0017893 | rno-miR-3591 | 6 | ......_ | 1 | 85 |
| MIMAT0016086 | ppy-miR-653 | 1 | _...... | 6 | 85 |
| MIMAT0014745 | api-miR-971 | 3 | ......_ | 8 | 85 |
| MIMAT0013961 | ssc-miR-505 | 7 | _...... | 2 | 85 |
| MIMAT0012947 | eca-miR-653 | 1 | _...... | 6 | 85 |
| MIMAT0012632 | bmo-miR-2752 | 8 | _...... | 3 | 85 |
| MIMAT0012226 | dps-miR-971-3p | 3 | ......_ | 8 | 85 |
| MIMAT0009924 | cfa-miR-653 | 1 | _...... | 6 | 85 |
| MIMAT0009358 | bta-miR-653 | 1 | _...... | 6 | 85 |
| MIMAT0009102 | dya-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0009003 | dwi-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008930 | dvi-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008899 | dsi-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008770 | dse-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008757 | dpe-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008659 | dmo-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008563 | dgr-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008483 | der-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008424 | dan-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0008303 | ptr-miR-653 | 1 | _...... | 6 | 85 |
| MIMAT0008272 | ptr-miR-609 | 3 | ......_ | 8 | 85 |
| MIMAT0006494 | mml-miR-653-5p | 1 | _...... | 6 | 85 |
| MIMAT0006462 | mml-miR-609 | 3 | ......_ | 8 | 85 |
| MIMAT0007377 | gma-miR1518 | 2 | _...... | 7 | 85 |
| MIMAT0005977 | osa-miR810b.1 | 8 | ......_ | 3 | 85 |
| MIMAT0026760 | oan-miR-1398-3p | 2 | _...... | 7 | 85 |
| MIMAT0005233 | smo-miR1082b | 1 | _...... | 6 | 85 |
| MIMAT0004477 | mdv2-miR-M30-5p | 6 | _...... | 1 | 85 |
| MIMAT0005487 | dme-miR-971-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004943 | mmu-miR-653-5p | 1 | _...... | 6 | 85 |
| MIMAT0003380 | rno-miR-505-3p | 8 | _...... | 3 | 85 |
| MIMAT0003328 | hsa-miR-653-5p | 1 | _...... | 6 | 85 |
| MIMAT0003277 | hsa-miR-609 | 3 | ......_ | 8 | 85 |
| MIMAT0002179 | kshv-miR-K12-10a-3p | 3 | _...... | 8 | 85 |
| MIMAT0001251 | dps-miR-287 | 2 | _...... | 7 | 85 |
| MIMAT0000360 | dme-miR-287-3p | 2 | _...... | 7 | 85 |
