| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtaactt | 7 | ||
| MIMAT0016963 | rlcv-miR-rL1-35-3p | 2 | ....... | 8 | 100 |
| MIMAT0013570 | cte-miR-216c | 8 | ....... | 2 | 100 |
| MIMAT0032041 | dvi-miR-314-5p | 1 | ....... | 7 | 100 |
| MIMAT0003424 | ebv-miR-BART13-3p | 2 | ....... | 8 | 100 |
| MIMAT0020840 | dme-miR-314-5p | 1 | ....... | 7 | 100 |
| MIMAT0036345 | gma-miR9727 | 8 | _...... | 3 | 85 |
| MIMAT0034151 | gra-miR8738b | 3 | _...... | 8 | 85 |
| MIMAT0034150 | gra-miR8738a | 3 | _...... | 8 | 85 |
| MIMAT0033808 | pxy-miR-9b-3p | 8 | _...... | 3 | 85 |
| MIMAT0033497 | str-miR-8401-3p | 3 | _...... | 8 | 85 |
| MIMAT0033337 | str-lin-4-3p | 8 | _...... | 3 | 85 |
| MIMAT0032862 | ppc-miR-8216-5p | 8 | ......_ | 3 | 85 |
| MIMAT0031564 | ppe-miR8133-3p | 1 | _...... | 6 | 85 |
| MIMAT0031368 | stu-miR169e-3p | 8 | _...... | 3 | 85 |
| MIMAT0031187 | stu-miR7993b-5p | 8 | _...... | 3 | 85 |
| MIMAT0029044 | gga-miR-7445-5p | 7 | _...... | 2 | 85 |
| MIMAT0028584 | mdo-miR-7298-5p | 8 | _...... | 3 | 85 |
| MIMAT0026364 | bma-miR-5865 | 3 | _...... | 8 | 85 |
| MIMAT0028029 | mmu-miR-7062-3p | 3 | _...... | 8 | 85 |
| MIMAT0025118 | mmu-miR-6374 | 6 | _...... | 1 | 85 |
| MIMAT0025003 | hme-miR-9a | 8 | _...... | 3 | 85 |
| MIMAT0024956 | hme-miR-2765 | 3 | ......_ | 8 | 85 |
| MIMAT0024473 | mse-miR-9a | 8 | _...... | 3 | 85 |
| MIMAT0024470 | mse-miR-2765 | 3 | ......_ | 8 | 85 |
| MIMAT0023551 | ame-miR-2765-5p | 3 | ......_ | 8 | 85 |
| MIMAT0022277 | hsa-miR-548at-5p | 8 | _...... | 3 | 85 |
| MIMAT0021877 | aca-miR-216b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0020282 | ssp-miR437c | 7 | _...... | 2 | 85 |
| MIMAT0020281 | ssp-miR437b | 7 | _...... | 2 | 85 |
| MIMAT0020280 | ssp-miR437a | 7 | _...... | 2 | 85 |
| MIMAT0020154 | dme-miR-4944-3p | 8 | ......_ | 3 | 85 |
| MIMAT0020029 | sko-miR-4824 | 1 | _...... | 6 | 85 |
| MIMAT0019751 | hsa-miR-4670-3p | 8 | _...... | 3 | 85 |
| MIMAT0018630 | tca-miR-2765-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017931 | aly-miR4242 | 7 | _...... | 2 | 85 |
| MIMAT0016042 | ppy-miR-600 | 6 | ......_ | 1 | 85 |
| MIMAT0015567 | bmo-miR-3377-5p | 8 | _...... | 3 | 85 |
| MIMAT0015486 | bmo-miR-3297-3p | 1 | _...... | 6 | 85 |
| MIMAT0014787 | api-miR-2765 | 3 | ......_ | 8 | 85 |
| MIMAT0026958 | tgu-miR-1451-3p | 3 | ......_ | 8 | 85 |
| MIMAT0014285 | aae-miR-2765 | 3 | ......_ | 8 | 85 |
| MIMAT0016957 | rlcv-miR-rL1-32-5p | 1 | _...... | 6 | 85 |
| MIMAT0013947 | ssc-miR-935 | 8 | ......_ | 3 | 85 |
| MIMAT0012845 | rno-miR-935 | 8 | ......_ | 3 | 85 |
| MIMAT0013640 | bmo-miR-2765 | 3 | ......_ | 8 | 85 |
| MIMAT0012621 | bmo-miR-9c-3p | 8 | _...... | 3 | 85 |
| MIMAT0012311 | dps-miR-2523 | 3 | ......_ | 8 | 85 |
| MIMAT0012256 | dps-miR-964-3p | 7 | _...... | 2 | 85 |
| MIMAT0020910 | dme-miR-2489-5p | 7 | _...... | 2 | 85 |
| MIMAT0011423 | sme-miR-2201-5p | 6 | ......_ | 1 | 85 |
| MIMAT0011386 | sbi-miR821b | 6 | _...... | 1 | 85 |
| MIMAT0011383 | sbi-miR437w | 7 | _...... | 2 | 85 |
| MIMAT0011382 | sbi-miR437v | 7 | _...... | 2 | 85 |
| MIMAT0011381 | sbi-miR437u | 7 | _...... | 2 | 85 |
| MIMAT0011380 | sbi-miR437t | 7 | _...... | 2 | 85 |
| MIMAT0011379 | sbi-miR437s | 7 | _...... | 2 | 85 |
| MIMAT0011378 | sbi-miR437r | 7 | _...... | 2 | 85 |
| MIMAT0011377 | sbi-miR437q | 7 | _...... | 2 | 85 |
| MIMAT0011376 | sbi-miR437p | 7 | _...... | 2 | 85 |
| MIMAT0011375 | sbi-miR437o | 7 | _...... | 2 | 85 |
| MIMAT0011374 | sbi-miR437n | 7 | _...... | 2 | 85 |
| MIMAT0011373 | sbi-miR437m | 7 | _...... | 2 | 85 |
| MIMAT0011372 | sbi-miR437l | 7 | _...... | 2 | 85 |
| MIMAT0011371 | sbi-miR437k | 7 | _...... | 2 | 85 |
| MIMAT0011370 | sbi-miR437j | 7 | _...... | 2 | 85 |
| MIMAT0011369 | sbi-miR437i | 7 | _...... | 2 | 85 |
| MIMAT0011368 | sbi-miR437g | 7 | _...... | 2 | 85 |
| MIMAT0011367 | sbi-miR437f | 7 | _...... | 2 | 85 |
| MIMAT0011366 | sbi-miR437e | 7 | _...... | 2 | 85 |
| MIMAT0011365 | sbi-miR437d | 7 | _...... | 2 | 85 |
| MIMAT0011364 | sbi-miR437c | 7 | _...... | 2 | 85 |
| MIMAT0011363 | sbi-miR437b | 7 | _...... | 2 | 85 |
| MIMAT0011362 | sbi-miR437a | 7 | _...... | 2 | 85 |
| MIMAT0012154 | sme-miR-2163-5p | 1 | _...... | 6 | 85 |
| MIMAT0009787 | nve-miR-2032b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0009785 | nve-miR-2032a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0009385 | bta-miR-935 | 8 | ......_ | 3 | 85 |
| MIMAT0008342 | ptr-miR-935 | 8 | ......_ | 3 | 85 |
| MIMAT0007855 | ath-miR1888a | 7 | _...... | 2 | 85 |
| MIMAT0006457 | mml-miR-600 | 6 | ......_ | 1 | 85 |
| MIMAT0026775 | gga-miR-1559-3p | 6 | ......_ | 1 | 85 |
| MIMAT0020937 | gma-miR1516a-5p | 7 | _...... | 2 | 85 |
| MIMAT0005983 | mdv1-miR-M11-3p | 8 | ......_ | 3 | 85 |
| MIMAT0007276 | oan-miR-1418-5p | 1 | _...... | 6 | 85 |
| MIMAT0020871 | dme-miR-974-3p | 3 | _...... | 8 | 85 |
| MIMAT0004978 | hsa-miR-935 | 8 | ......_ | 3 | 85 |
| MIMAT0001586 | osa-miR437 | 7 | _...... | 2 | 85 |
