| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtagagt | 7 | ||
| MIMAT0008401 | hsv1-miR-H4-5p | 2 | ....... | 8 | 100 |
| MIMAT0003781 | mmu-miR-676-5p | 7 | ....... | 1 | 100 |
| MIMAT0036300 | chi-miR-877-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035261 | gsa-let-7-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033227 | ppc-miR-8341-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032804 | cel-miR-8195-3p | 1 | ......_ | 6 | 85 |
| MIMAT0031688 | bbe-miR-4865-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030927 | stu-miR8026 | 3 | ......_ | 8 | 85 |
| MIMAT0030897 | stu-miR8005c | 3 | _...... | 8 | 85 |
| MIMAT0030896 | stu-miR8005b-3p | 3 | _...... | 8 | 85 |
| MIMAT0031191 | stu-miR8005b-5p | 6 | _...... | 1 | 85 |
| MIMAT0030895 | stu-miR8005a | 3 | _...... | 8 | 85 |
| MIMAT0028700 | mdo-miR-1251-5p | 6 | _...... | 1 | 85 |
| MIMAT0031091 | mdo-miR-7331-2-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028242 | mml-miR-1251-5p | 6 | _...... | 1 | 85 |
| MIMAT0026406 | sbi-miR437x-5p | 1 | _...... | 6 | 85 |
| MIMAT0028134 | mmu-miR-7118-3p | 8 | _...... | 3 | 85 |
| MIMAT0028100 | ddi-miR-7097 | 8 | ......_ | 3 | 85 |
| MIMAT0027849 | mmu-miR-6973a-3p | 7 | _...... | 2 | 85 |
| MIMAT0025051 | rno-miR-3102 | 6 | ......_ | 1 | 85 |
| MIMAT0024362 | ppy-miR-4451 | 3 | ......_ | 8 | 85 |
| MIMAT0024155 | ggo-miR-877 | 1 | ......_ | 6 | 85 |
| MIMAT0023011 | bra-miR5714 | 8 | _...... | 3 | 85 |
| MIMAT0022473 | hsa-miR-5684 | 7 | _...... | 2 | 85 |
| MIMAT0022420 | ath-miR781b | 2 | _...... | 7 | 85 |
| MIMAT0022046 | aca-miR-5426-5p | 7 | _...... | 2 | 85 |
| MIMAT0020616 | mmu-miR-5108 | 1 | ......_ | 6 | 85 |
| MIMAT0021035 | hsa-miR-5007-5p | 1 | _...... | 6 | 85 |
| MIMAT0019769 | hsa-miR-4684-5p | 8 | ......_ | 3 | 85 |
| MIMAT0018973 | hsa-miR-4451 | 3 | ......_ | 8 | 85 |
| MIMAT0018449 | csi-miR3946 | 3 | ......_ | 8 | 85 |
| MIMAT0018285 | gma-miR4379 | 1 | _...... | 6 | 85 |
| MIMAT0016176 | ppy-miR-1251 | 6 | _...... | 1 | 85 |
| MIMAT0016117 | ppy-miR-877 | 1 | ......_ | 6 | 85 |
| MIMAT0016060 | ppy-miR-618 | 8 | _...... | 3 | 85 |
| MIMAT0017597 | aly-miR781-5p | 2 | _...... | 7 | 85 |
| MIMAT0014935 | mmu-miR-3102-3p.2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014824 | mmu-miR-1251-5p | 6 | _...... | 1 | 85 |
| MIMAT0013071 | eca-miR-1461 | 8 | ......_ | 3 | 85 |
| MIMAT0009963 | bta-miR-1251 | 6 | _...... | 1 | 85 |
| MIMAT0009381 | bta-miR-877 | 1 | ......_ | 6 | 85 |
| MIMAT0008932 | dvi-miR-282-5p | 6 | ......_ | 1 | 85 |
| MIMAT0008280 | ptr-miR-618 | 8 | _...... | 3 | 85 |
| MIMAT0007977 | ptr-miR-1251 | 6 | _...... | 1 | 85 |
| MIMAT0006521 | mml-miR-877-5p | 1 | ......_ | 6 | 85 |
| MIMAT0006468 | mml-miR-618 | 8 | _...... | 3 | 85 |
| MIMAT0007339 | gga-miR-216c | 8 | ......_ | 3 | 85 |
| MIMAT0005903 | hsa-miR-1251-5p | 6 | _...... | 1 | 85 |
| MIMAT0005285 | rno-miR-877 | 1 | ......_ | 6 | 85 |
| MIMAT0005171 | ppt-miR1053-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005101 | ppt-miR1223j | 3 | ......_ | 8 | 85 |
| MIMAT0005100 | ppt-miR1223i | 3 | ......_ | 8 | 85 |
| MIMAT0005099 | ppt-miR1223h | 3 | ......_ | 8 | 85 |
| MIMAT0005098 | ppt-miR1223g | 3 | ......_ | 8 | 85 |
| MIMAT0005097 | ppt-miR1223f | 3 | ......_ | 8 | 85 |
| MIMAT0005096 | ppt-miR1223e | 3 | ......_ | 8 | 85 |
| MIMAT0005095 | ppt-miR1223d | 3 | ......_ | 8 | 85 |
| MIMAT0005094 | ppt-miR1223c | 3 | ......_ | 8 | 85 |
| MIMAT0005093 | ppt-miR1223b | 3 | ......_ | 8 | 85 |
| MIMAT0004949 | hsa-miR-877-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004861 | mmu-miR-877-5p | 1 | ......_ | 6 | 85 |
| MIMAT0003940 | ath-miR781a | 2 | _...... | 7 | 85 |
| MIMAT0003918 | ppt-miR1223a | 3 | ......_ | 8 | 85 |
| MIMAT0003287 | hsa-miR-618 | 8 | _...... | 3 | 85 |
| MIMAT0031928 | dre-miR-430b-5p | 8 | _...... | 3 | 85 |
