| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtatcag | 7 | ||
| MIMAT0033015 | ppc-miR-8265-3p | 8 | ....... | 2 | 100 |
| MIMAT0031844 | cpa-miR8147 | 8 | ....... | 2 | 100 |
| MIMAT0036517 | tch-miR-361-5p | 2 | _...... | 7 | 85 |
| MIMAT0036183 | chi-miR-374b-3p | 3 | _...... | 8 | 85 |
| MIMAT0036181 | chi-miR-374a-3p | 3 | _...... | 8 | 85 |
| MIMAT0036171 | chi-miR-361-5p | 2 | _...... | 7 | 85 |
| MIMAT0035403 | nve-miR-9442 | 3 | _...... | 8 | 85 |
| MIMAT0035289 | gsa-miR-9-3p | 2 | _...... | 7 | 85 |
| MIMAT0035058 | efu-miR-361 | 2 | _...... | 7 | 85 |
| MIMAT0034840 | efu-miR-9237c | 1 | _...... | 6 | 85 |
| MIMAT0033948 | atr-miR828 | 6 | ......_ | 1 | 85 |
| MIMAT0033469 | str-miR-8379b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0033035 | ppc-miR-8271-5p | 1 | _...... | 6 | 85 |
| MIMAT0033016 | ppc-miR-8266-5p | 2 | _...... | 7 | 85 |
| MIMAT0031145 | aja-miR-3074 | 3 | _...... | 8 | 85 |
| MIMAT0025770 | gga-miR-6669-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025582 | mmu-miR-6537-3p | 2 | _...... | 7 | 85 |
| MIMAT0025469 | hsa-miR-6506-3p | 3 | ......_ | 8 | 85 |
| MIMAT0025209 | ptc-miR6470 | 8 | _...... | 3 | 85 |
| MIMAT0024169 | ggo-miR-374a | 3 | _...... | 8 | 85 |
| MIMAT0024136 | ggo-miR-361 | 2 | _...... | 7 | 85 |
| MIMAT0023940 | cgr-miR-374-3p | 3 | _...... | 8 | 85 |
| MIMAT0023933 | cgr-miR-361 | 2 | _...... | 7 | 85 |
| MIMAT0018830 | tca-miR-3869-5p | 7 | _...... | 2 | 85 |
| MIMAT0017815 | rno-miR-3074 | 3 | _...... | 8 | 85 |
| MIMAT0015848 | ppy-miR-361-5p | 2 | _...... | 7 | 85 |
| MIMAT0015396 | bmo-miR-3216 | 1 | _...... | 6 | 85 |
| MIMAT0015035 | hsa-miR-3161 | 6 | _...... | 1 | 85 |
| MIMAT0015027 | hsa-miR-3074-3p | 3 | _...... | 8 | 85 |
| MIMAT0014857 | mmu-miR-3074-1-3p | 3 | _...... | 8 | 85 |
| MIMAT0013933 | ssc-miR-361-5p | 2 | _...... | 7 | 85 |
| MIMAT0017378 | ssc-miR-374b-3p | 3 | _...... | 8 | 85 |
| MIMAT0013914 | ssc-miR-374a-3p | 3 | _...... | 8 | 85 |
| MIMAT0013208 | eca-miR-361-5p | 2 | _...... | 7 | 85 |
| MIMAT0013340 | mtr-miR2620 | 8 | _...... | 3 | 85 |
| MIMAT0012014 | bta-miR-2439-3p | 1 | _...... | 6 | 85 |
| MIMAT0011799 | bta-miR-2291 | 7 | _...... | 2 | 85 |
| MIMAT0011319 | mtr-miR2199 | 6 | ......_ | 1 | 85 |
| MIMAT0010054 | osa-miR2095-5p | 6 | _...... | 1 | 85 |
| MIMAT0019093 | tca-miR-2c-5p | 3 | _...... | 8 | 85 |
| MIMAT0006751 | cfa-miR-361 | 2 | _...... | 7 | 85 |
| MIMAT0026859 | mml-miR-374a-3p | 3 | _...... | 8 | 85 |
| MIMAT0006286 | mml-miR-361-5p | 2 | _...... | 7 | 85 |
| MIMAT0006147 | mdo-miR-1547-5p | 1 | _...... | 6 | 85 |
| MIMAT0020891 | dme-miR-992-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003830 | bta-miR-361 | 2 | _...... | 7 | 85 |
| MIMAT0004830 | ppt-miR1217-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003117 | rno-miR-361-5p | 2 | _...... | 7 | 85 |
| MIMAT0004688 | hsa-miR-374a-3p | 3 | _...... | 8 | 85 |
| MIMAT0000704 | mmu-miR-361-5p | 2 | _...... | 7 | 85 |
| MIMAT0000703 | hsa-miR-361-5p | 2 | _...... | 7 | 85 |
