| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtatgcc | 7 | ||
| MIMAT0022672 | aau-miR160 | 8 | ....... | 2 | 100 |
| MIMAT0014063 | osa-miR2932 | 2 | ....... | 8 | 100 |
| MIMAT0017363 | rno-miR-675-3p | 2 | ....... | 8 | 100 |
| MIMAT0012374 | dps-miR-2556-5p | 1 | ....... | 7 | 100 |
| MIMAT0003716 | ebv-miR-BART17-3p | 2 | ....... | 8 | 100 |
| MIMAT0035231 | dme-miR-9384-5p | 7 | _...... | 2 | 85 |
| MIMAT0032978 | ppc-miR-8255-5p | 1 | _...... | 6 | 85 |
| MIMAT0029658 | cbn-miR-7619 | 1 | _...... | 6 | 85 |
| MIMAT0025077 | mmu-miR-6335 | 8 | ......_ | 3 | 85 |
| MIMAT0025010 | hme-miR-6305-5p | 1 | ......_ | 6 | 85 |
| MIMAT0021931 | aca-miR-31-3p | 1 | _...... | 6 | 85 |
| MIMAT0020720 | bdi-miR5176-5p | 1 | _...... | 6 | 85 |
| MIMAT0019689 | hsa-miR-4633-5p | 2 | _...... | 7 | 85 |
| MIMAT0018361 | hsa-miR-3945 | 8 | _...... | 3 | 85 |
| MIMAT0018039 | vvi-miR3634-5p | 6 | _...... | 1 | 85 |
| MIMAT0018011 | vvi-miR3624-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017816 | rno-miR-31b | 2 | _...... | 7 | 85 |
| MIMAT0016387 | gga-miR-3536 | 8 | ......_ | 3 | 85 |
| MIMAT0016099 | ppy-miR-675b | 3 | ......_ | 8 | 85 |
| MIMAT0017701 | aly-miR3435-5p | 7 | _...... | 2 | 85 |
| MIMAT0015517 | bmo-miR-3329 | 6 | ......_ | 1 | 85 |
| MIMAT0012376 | dps-miR-2557-5p | 1 | ......_ | 6 | 85 |
| MIMAT0012347 | dps-miR-2543b-3p | 1 | _...... | 6 | 85 |
| MIMAT0011234 | sme-miR-2153 | 8 | _...... | 3 | 85 |
| MIMAT0009655 | spu-miR-22 | 3 | _...... | 8 | 85 |
| MIMAT0026908 | mml-miR-675-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007636 | gga-miR-1734 | 2 | _...... | 7 | 85 |
| MIMAT0006790 | hsa-miR-675-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026653 | mdo-miR-31-3p | 3 | _...... | 8 | 85 |
| MIMAT0012091 | sme-miR-1b-5p | 6 | _...... | 1 | 85 |
| MIMAT0003726 | mmu-miR-675-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026577 | mml-miR-31-3p | 3 | _...... | 8 | 85 |
