| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtctccg | 7 | ||
| MIMAT0034745 | eca-miR-9167 | 2 | ....... | 8 | 100 |
| MIMAT0021083 | hsa-miR-5091 | 8 | ....... | 2 | 100 |
| MIMAT0013968 | bhv1-miR-B6-3p | 2 | ....... | 8 | 100 |
| MIMAT0012542 | mdv2-miR-M23-3p | 1 | ....... | 7 | 100 |
| MIMAT0034918 | efu-miR-9280 | 2 | _...... | 7 | 85 |
| MIMAT0031418 | mmu-miR-8112 | 1 | _...... | 6 | 85 |
| MIMAT0028159 | ssc-miR-7142-5p | 3 | _...... | 8 | 85 |
| MIMAT0027726 | mmu-miR-6913-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025548 | bta-miR-3957 | 8 | _...... | 3 | 85 |
| MIMAT0025341 | pde-miR949b | 1 | _...... | 6 | 85 |
| MIMAT0025259 | ptc-miR6426b | 8 | ......_ | 3 | 85 |
| MIMAT0025221 | ptc-miR6426a | 8 | ......_ | 3 | 85 |
| MIMAT0024281 | ggo-miR-3615 | 3 | _...... | 8 | 85 |
| MIMAT0023391 | hco-miR-5918a | 3 | ......_ | 8 | 85 |
| MIMAT0023116 | hsa-miR-5739 | 7 | _...... | 2 | 85 |
| MIMAT0020648 | rgl-miR5137 | 8 | _...... | 3 | 85 |
| MIMAT0020561 | osa-miR5075 | 2 | _...... | 7 | 85 |
| MIMAT0020171 | dme-miR-4955-5p | 8 | _...... | 3 | 85 |
| MIMAT0019406 | pma-miR-25b-5p | 8 | _...... | 3 | 85 |
| MIMAT0019325 | oar-miR-3957-5p | 8 | _...... | 3 | 85 |
| MIMAT0018514 | ame-miR-3746 | 8 | _...... | 3 | 85 |
| MIMAT0015762 | ppy-miR-139-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017647 | aly-miR859-5p | 3 | _...... | 8 | 85 |
| MIMAT0013015 | eca-miR-769a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012984 | eca-miR-139-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017362 | rno-miR-802-3p | 7 | _...... | 2 | 85 |
| MIMAT0012730 | iltv-miR-I6-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008035 | ptr-miR-139 | 6 | ......_ | 1 | 85 |
| MIMAT0006196 | mml-miR-139-3p | 6 | ......_ | 1 | 85 |
| MIMAT0007609 | gga-miR-1713 | 8 | _...... | 3 | 85 |
| MIMAT0015265 | cin-miR-281-5p | 6 | _...... | 1 | 85 |
| MIMAT0007210 | oan-miR-1403 | 1 | ......_ | 6 | 85 |
| MIMAT0007209 | oan-miR-1402 | 7 | _...... | 2 | 85 |
| MIMAT0005149 | ppt-miR1039-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005009 | pta-miR949 | 1 | _...... | 6 | 85 |
| MIMAT0022717 | hsa-miR-873-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017240 | mmu-miR-802-3p | 7 | _...... | 2 | 85 |
