| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtctcggc | 8 | ||
| MIMAT0035341 | gsa-miR-9397-3p | 1 | _....... | 7 | 87 |
| MIMAT0035109 | efu-miR-9341 | 1 | _....... | 7 | 87 |
| MIMAT0034596 | eca-miR-9052 | 7 | ......._ | 1 | 87 |
| MIMAT0029000 | oan-miR-7425-5p | 2 | _....... | 8 | 87 |
| MIMAT0025353 | pde-miR3704a | 2 | ......._ | 8 | 87 |
| MIMAT0018304 | gma-miR4391 | 1 | _....... | 7 | 87 |
| MIMAT0017918 | aly-miR4230 | 2 | ......._ | 8 | 87 |
| MIMAT0012857 | rno-miR-678 | 1 | ......._ | 7 | 87 |
| MIMAT0011697 | ppc-miR-2263 | 1 | ......._ | 7 | 87 |
| MIMAT0005385 | cre-miR1147.2 | 1 | _....... | 7 | 87 |
| MIMAT0003465 | mmu-miR-719 | 2 | _....... | 8 | 87 |
| MIMAT0003452 | mmu-miR-678 | 1 | ......._ | 7 | 87 |
| MIMAT0025690 | gga-miR-6596-5p | 8 | .g...... | 1 | 87 |
| MIMAT0021062 | gma-miR169h | 8 | ......c. | 1 | 87 |
| MIMAT0037276 | ame-miR-9872 | 8 | ......__ | 3 | 75 |
| MIMAT0036971 | bta-miR-4523 | 8 | _......_ | 3 | 75 |
| MIMAT0035942 | chi-miR-1307-3p | 2 | __...... | 7 | 75 |
| MIMAT0034608 | eca-miR-9063 | 7 | _......_ | 2 | 75 |
| MIMAT0034589 | eca-miR-1307 | 2 | __...... | 7 | 75 |
| MIMAT0034175 | gra-miR8749 | 1 | _......_ | 6 | 75 |
| MIMAT0033916 | atr-miR166b | 1 | _......_ | 6 | 75 |
| MIMAT0033254 | ppc-miR-8351-5p | 3 | __...... | 8 | 75 |
| MIMAT0032845 | cel-miR-8212-3p | 8 | ......__ | 3 | 75 |
| MIMAT0029994 | mtr-miR7697-5p | 7 | _......_ | 2 | 75 |
| MIMAT0029005 | oan-miR-7427-3p | 1 | __...... | 6 | 75 |
| MIMAT0028415 | mmu-miR-7223-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028287 | mml-miR-7174-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025498 | han-miR160a | 3 | __...... | 8 | 75 |
| MIMAT0025354 | pde-miR3704b | 2 | ......__ | 7 | 75 |
| MIMAT0025079 | mmu-miR-6336 | 1 | _......_ | 6 | 75 |
| MIMAT0024903 | gma-miR166u | 1 | _......_ | 6 | 75 |
| MIMAT0023488 | hco-miR-5978 | 8 | ......__ | 3 | 75 |
| MIMAT0023442 | hco-miR-5918d | 1 | __...... | 6 | 75 |
| MIMAT0023223 | gma-miR166k | 1 | _......_ | 6 | 75 |
| MIMAT0022217 | mtr-miR2592bn-5p | 1 | __...... | 6 | 75 |
| MIMAT0022213 | mtr-miR2592bm-5p | 1 | __...... | 6 | 75 |
| MIMAT0021485 | asu-miR-92-5p | 8 | __...... | 3 | 75 |
| MIMAT0020658 | bdi-miR166f | 1 | _......_ | 6 | 75 |
| MIMAT0020984 | gma-miR166h-3p | 1 | _......_ | 6 | 75 |
| MIMAT0020222 | dme-miR-4985-3p | 8 | __...... | 3 | 75 |
| MIMAT0020199 | dme-miR-4972-5p | 2 | __...... | 7 | 75 |
| MIMAT0020140 | cel-miR-4934 | 7 | __...... | 2 | 75 |
| MIMAT0019870 | hsa-miR-4740-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019740 | hsa-miR-4665-3p | 1 | __...... | 6 | 75 |
| MIMAT0019695 | hsa-miR-4638-5p | 2 | __...... | 7 | 75 |
| MIMAT0019544 | pma-miR-375b-5p | 8 | __...... | 3 | 75 |
| MIMAT0019542 | pma-miR-375a-5p | 8 | __...... | 3 | 75 |
| MIMAT0019061 | hsa-miR-4523 | 8 | _......_ | 3 | 75 |
| MIMAT0018755 | tca-miR-3850-3p | 8 | ......__ | 3 | 75 |
| MIMAT0017994 | hsa-miR-3615 | 3 | _......_ | 8 | 75 |
| MIMAT0016232 | ppy-miR-1469 | 1 | __...... | 6 | 75 |
| MIMAT0016227 | ppy-miR-1307 | 2 | __...... | 7 | 75 |
| MIMAT0017593 | aly-miR774a-5p.1 | 6 | ......__ | 1 | 75 |
| MIMAT0013936 | ssc-miR-1307 | 2 | __...... | 7 | 75 |
| MIMAT0013680 | bmo-miR-2784 | 2 | __...... | 7 | 75 |
| MIMAT0012608 | bmo-miR-2731 | 8 | ......__ | 3 | 75 |
| MIMAT0011568 | crm-miR-72-3p | 3 | __...... | 8 | 75 |
| MIMAT0009969 | bta-miR-1307 | 2 | __...... | 7 | 75 |
| MIMAT0008024 | ptr-miR-1307 | 2 | __...... | 7 | 75 |
| MIMAT0006665 | cfa-miR-1307 | 2 | __...... | 7 | 75 |
| MIMAT0006373 | mml-miR-516a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007347 | hsa-miR-1469 | 1 | __...... | 6 | 75 |
| MIMAT0026758 | oan-miR-1389-5p | 2 | __...... | 7 | 75 |
| MIMAT0006917 | oan-miR-1345 | 6 | __...... | 1 | 75 |
| MIMAT0005951 | hsa-miR-1307-3p | 2 | __...... | 7 | 75 |
| MIMAT0005391 | cre-miR1150.2 | 8 | __...... | 3 | 75 |
| MIMAT0004273 | ath-miR851-5p | 1 | _......_ | 6 | 75 |
| MIMAT0015117 | cel-miR-243-5p | 3 | _......_ | 8 | 75 |
