| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtggaac | 7 | ||
| MIMAT0035588 | dvi-miR-969-5p | 8 | ....... | 2 | 100 |
| MIMAT0034148 | gra-miR8736 | 1 | ....... | 7 | 100 |
| MIMAT0021606 | gma-miR5037c | 2 | ....... | 8 | 100 |
| MIMAT0018122 | hsa-miR-3692-3p | 7 | ....... | 1 | 100 |
| MIMAT0037224 | ata-miR9677-5p | 6 | ......_ | 1 | 85 |
| MIMAT0037170 | ata-miR396c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0037168 | ata-miR396e-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035852 | bra-miR396-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035785 | tae-miR9670-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035481 | sly-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0035455 | sly-miR396a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0034189 | gra-miR8759 | 3 | ......_ | 8 | 85 |
| MIMAT0033972 | esi-miR8623b | 3 | _...... | 8 | 85 |
| MIMAT0033942 | atr-miR396e | 6 | ......_ | 1 | 85 |
| MIMAT0033940 | atr-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0033939 | atr-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0033620 | sma-miR-8454-5p | 2 | _...... | 7 | 85 |
| MIMAT0033569 | sma-miR-8432-3p | 3 | _...... | 8 | 85 |
| MIMAT0031858 | lus-miR396e | 6 | ......_ | 1 | 85 |
| MIMAT0031822 | cpa-miR396 | 6 | ......_ | 1 | 85 |
| MIMAT0031523 | ppe-miR8122-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031495 | ppe-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0031494 | ppe-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0031335 | stu-miR396-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030309 | bdi-miR7777-3p.1 | 8 | _...... | 3 | 85 |
| MIMAT0031154 | ama-miR396-5p | 6 | ......_ | 1 | 85 |
| MIMAT0029898 | mmu-miR-7686-5p | 8 | ......_ | 3 | 85 |
| MIMAT0029804 | mmu-miR-7651-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029278 | mes-miR396f | 6 | ......_ | 1 | 85 |
| MIMAT0029277 | mes-miR396e | 6 | ......_ | 1 | 85 |
| MIMAT0029276 | mes-miR396d | 6 | ......_ | 1 | 85 |
| MIMAT0029275 | mes-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0029274 | mes-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0029273 | mes-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0028651 | mdo-miR-7325-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028267 | mml-miR-7166-3p | 1 | ......_ | 6 | 85 |
| MIMAT0026162 | cme-miR396e | 6 | ......_ | 1 | 85 |
| MIMAT0026147 | cme-miR396d | 6 | ......_ | 1 | 85 |
| MIMAT0026146 | cme-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0026145 | cme-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0026106 | cme-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0025995 | mdm-miR396g | 6 | ......_ | 1 | 85 |
| MIMAT0025994 | mdm-miR396f | 6 | ......_ | 1 | 85 |
| MIMAT0025993 | mdm-miR396e | 6 | ......_ | 1 | 85 |
| MIMAT0025992 | mdm-miR396d | 6 | ......_ | 1 | 85 |
| MIMAT0025991 | mdm-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0025990 | mdm-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0025989 | mdm-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0027566 | hsa-miR-6833-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025817 | gga-miR-6707-5p | 3 | _...... | 8 | 85 |
| MIMAT0025787 | gga-miR-6682-3p | 1 | _...... | 6 | 85 |
| MIMAT0025772 | gga-miR-6670-5p | 1 | ......_ | 6 | 85 |
| MIMAT0025475 | hsa-miR-6509-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025287 | hbr-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0025062 | rno-miR-6323 | 1 | _...... | 6 | 85 |
| MIMAT0024710 | nta-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0024709 | nta-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0024708 | nta-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0027213 | lus-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0027212 | lus-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0027207 | lus-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0024529 | cca-miR396a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0023536 | dpr-miR396 | 6 | ......_ | 1 | 85 |
| MIMAT0023516 | spu-miR-5994 | 1 | _...... | 6 | 85 |
| MIMAT0032132 | gma-miR396k-5p | 6 | ......_ | 1 | 85 |
| MIMAT0022517 | ssl-miR396 | 6 | ......_ | 1 | 85 |
| MIMAT0022680 | amg-miR396 | 6 | ......_ | 1 | 85 |
| MIMAT0022674 | aau-miR396 | 6 | ......_ | 1 | 85 |
| MIMAT0021669 | gma-miR396i-5p | 6 | ......_ | 1 | 85 |
| MIMAT0021231 | mtr-miR2592bk | 1 | _...... | 6 | 85 |
| MIMAT0021230 | mtr-miR2592bj | 1 | _...... | 6 | 85 |
| MIMAT0021229 | mtr-miR2592bi | 1 | _...... | 6 | 85 |
| MIMAT0020295 | ssp-miR396 | 6 | ......_ | 1 | 85 |
| MIMAT0020683 | bdi-miR396e-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020676 | bdi-miR396c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020671 | bdi-miR396d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020502 | bfl-miR-4906 | 7 | _...... | 2 | 85 |
| MIMAT0020431 | tcc-miR396e | 6 | ......_ | 1 | 85 |
| MIMAT0020430 | tcc-miR396d | 6 | ......_ | 1 | 85 |
| MIMAT0020429 | tcc-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0020428 | tcc-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0020427 | tcc-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0019363 | hsa-miR-3978 | 1 | ......_ | 6 | 85 |
| MIMAT0020966 | bcy-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0020965 | bcy-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0020962 | bgy-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0020961 | bgy-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0018464 | csi-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0018463 | csi-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0018345 | gma-miR396e | 6 | ......_ | 1 | 85 |
| MIMAT0018820 | tca-miR-750-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018625 | tca-miR-3804a-3p | 8 | _...... | 3 | 85 |
| MIMAT0018154 | pab-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0018153 | pab-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0018152 | pab-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0016482 | cin-miR-4006f-5p | 1 | _...... | 6 | 85 |
| MIMAT0016480 | cin-miR-4006e-5p | 1 | _...... | 6 | 85 |
| MIMAT0016478 | cin-miR-4006a-5p | 1 | _...... | 6 | 85 |
| MIMAT0016476 | cin-miR-4006d-5p | 1 | _...... | 6 | 85 |
| MIMAT0016474 | cin-miR-4006c-5p | 1 | _...... | 6 | 85 |
| MIMAT0016472 | cin-miR-4006b-5p | 1 | _...... | 6 | 85 |
| MIMAT0016459 | cin-miR-4001h-5p | 1 | _...... | 6 | 85 |
| MIMAT0016446 | cin-miR-4001b-5p | 1 | _...... | 6 | 85 |
| MIMAT0016458 | cin-miR-4001g-3p | 1 | _...... | 6 | 85 |
| MIMAT0016456 | cin-miR-4001f-5p | 1 | _...... | 6 | 85 |
| MIMAT0016454 | cin-miR-4001e-5p | 1 | _...... | 6 | 85 |
| MIMAT0016452 | cin-miR-4001d-5p | 1 | _...... | 6 | 85 |
| MIMAT0016444 | cin-miR-4001a-5p | 1 | _...... | 6 | 85 |
| MIMAT0017756 | esi-miR3455-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017559 | aly-miR396b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017557 | aly-miR396a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0015425 | bmo-miR-3243 | 1 | _...... | 6 | 85 |
| MIMAT0014192 | rco-miR396 | 6 | ......_ | 1 | 85 |
| MIMAT0014078 | ccl-miR396 | 6 | ......_ | 1 | 85 |
| MIMAT0014015 | zma-miR396f-5p | 6 | ......_ | 1 | 85 |
| MIMAT0014014 | zma-miR396e-5p | 6 | ......_ | 1 | 85 |
| MIMAT0013705 | bmo-miR-2801 | 1 | ......_ | 6 | 85 |
| MIMAT0012577 | aqc-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0012576 | aqc-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0012479 | dsi-miR-969-5p | 8 | _...... | 3 | 85 |
| MIMAT0012275 | dps-miR-969-5p | 8 | _...... | 3 | 85 |
| MIMAT0012069 | bta-miR-2477 | 1 | ......_ | 6 | 85 |
| MIMAT0011358 | sbi-miR396e | 6 | ......_ | 1 | 85 |
| MIMAT0010088 | lja-miR396 | 6 | ......_ | 1 | 85 |
| MIMAT0010079 | gma-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0010077 | zma-miR396d | 6 | ......_ | 1 | 85 |
| MIMAT0010076 | zma-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0009137 | osa-miR1320-5p | 1 | _...... | 6 | 85 |
| MIMAT0006560 | vvi-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0026900 | mml-miR-584-3p | 7 | _...... | 2 | 85 |
| MIMAT0006030 | odi-miR-1478 | 1 | _...... | 6 | 85 |
| MIMAT0007027 | oan-miR-1364 | 6 | ......_ | 1 | 85 |
| MIMAT0006951 | oan-miR-1355-5p | 7 | _...... | 2 | 85 |
| MIMAT0005726 | vvi-miR396d | 6 | ......_ | 1 | 85 |
| MIMAT0005725 | vvi-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0005724 | vvi-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0005379 | cre-miR1144a.2 | 1 | _...... | 6 | 85 |
| MIMAT0005227 | smo-miR396 | 6 | ......_ | 1 | 85 |
| MIMAT0005485 | dme-miR-969-5p | 8 | _...... | 3 | 85 |
| MIMAT0004999 | pta-miR396 | 6 | ......_ | 1 | 85 |
| MIMAT0004448 | bna-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0005819 | ghr-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0005818 | ghr-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0011108 | mtr-miR396b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0011107 | mtr-miR396a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0003964 | sme-miR-2a-1-5p | 7 | _...... | 2 | 85 |
| MIMAT0002037 | ptc-miR396g-5p | 6 | ......_ | 1 | 85 |
| MIMAT0002036 | ptc-miR396f | 6 | ......_ | 1 | 85 |
| MIMAT0002035 | ptc-miR396e-5p | 6 | ......_ | 1 | 85 |
| MIMAT0002034 | ptc-miR396d | 6 | ......_ | 1 | 85 |
| MIMAT0002033 | ptc-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0002032 | ptc-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0002031 | ptc-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0001703 | zma-miR396a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0001702 | zma-miR396b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0001688 | gma-miR396b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0001687 | gma-miR396a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0001657 | sof-miR396 | 6 | ......_ | 1 | 85 |
| MIMAT0001436 | sbi-miR396c | 6 | ......_ | 1 | 85 |
| MIMAT0001435 | sbi-miR396a | 6 | ......_ | 1 | 85 |
| MIMAT0001434 | sbi-miR396b | 6 | ......_ | 1 | 85 |
| MIMAT0000979 | osa-miR396c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0000978 | osa-miR396b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0000977 | osa-miR396a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0000945 | ath-miR396b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0000944 | ath-miR396a-5p | 6 | ......_ | 1 | 85 |
