| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtggatg | 7 | ||
| MIMAT0035049 | efu-miR-9322 | 2 | ....... | 8 | 100 |
| MIMAT0032882 | ppc-miR-36-5p | 2 | ....... | 8 | 100 |
| MIMAT0030812 | prd-miR-39-5p | 1 | ....... | 7 | 100 |
| MIMAT0030680 | prd-miR-40-5p | 2 | ....... | 8 | 100 |
| MIMAT0028680 | mdo-miR-7336-5p | 2 | ....... | 8 | 100 |
| MIMAT0021439 | asu-miR-36a-5p | 2 | ....... | 8 | 100 |
| MIMAT0018120 | hsa-miR-3691-5p | 2 | ....... | 8 | 100 |
| MIMAT0005427 | cre-miR1169-3p | 2 | ....... | 8 | 100 |
| MIMAT0015098 | cel-miR-48-3p | 8 | ....... | 2 | 100 |
| MIMAT0020307 | cel-miR-40-5p | 2 | ....... | 8 | 100 |
| MIMAT0037245 | ata-miR319-3p | 3 | _...... | 8 | 85 |
| MIMAT0037187 | ata-miR5062a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0037043 | ssc-miR-9825-5p | 3 | ......_ | 8 | 85 |
| MIMAT0037016 | ssc-miR-9798-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036395 | gma-miR9760 | 1 | _...... | 6 | 85 |
| MIMAT0036267 | chi-miR-502b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0036228 | chi-miR-432-3p | 3 | _...... | 8 | 85 |
| MIMAT0035802 | tae-miR9676-5p | 1 | _...... | 6 | 85 |
| MIMAT0035424 | nve-miR-9465 | 2 | _...... | 7 | 85 |
| MIMAT0034838 | efu-miR-9232 | 2 | _...... | 7 | 85 |
| MIMAT0034808 | efu-miR-9216 | 3 | _...... | 8 | 85 |
| MIMAT0034439 | eca-miR-8911 | 3 | _...... | 8 | 85 |
| MIMAT0034431 | cfa-miR-8834b | 1 | _...... | 6 | 85 |
| MIMAT0034412 | cfa-miR-8902 | 6 | _...... | 1 | 85 |
| MIMAT0034285 | cfa-miR-8795 | 2 | _...... | 7 | 85 |
| MIMAT0034211 | gra-miR8773 | 2 | _...... | 7 | 85 |
| MIMAT0033716 | pxy-miR-8504 | 7 | _...... | 2 | 85 |
| MIMAT0032850 | ppc-miR-2235b-5p | 7 | _...... | 2 | 85 |
| MIMAT0032656 | ssa-miR-462b-3p | 3 | _...... | 8 | 85 |
| MIMAT0032654 | ssa-miR-462a-3p | 3 | _...... | 8 | 85 |
| MIMAT0031474 | ppe-miR393a | 6 | _...... | 1 | 85 |
| MIMAT0030824 | prd-miR-7962-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030784 | prd-miR-44-5p | 2 | _...... | 7 | 85 |
| MIMAT0030085 | bdi-miR159b-3p.2 | 6 | ......_ | 1 | 85 |
| MIMAT0028815 | mdo-miR-7379-3p | 3 | _...... | 8 | 85 |
| MIMAT0028604 | mdo-miR-7305-5p | 7 | _...... | 2 | 85 |
| MIMAT0028600 | mdo-miR-7303-5p | 7 | _...... | 2 | 85 |
| MIMAT0028505 | mdo-miR-7267-3p | 6 | _...... | 1 | 85 |
| MIMAT0028167 | hcmv-miR-US29-5p | 1 | _...... | 6 | 85 |
| MIMAT0026445 | sbi-miR6232a-3p | 1 | _...... | 6 | 85 |
| MIMAT0026344 | bma-miR-5846 | 1 | ......_ | 6 | 85 |
| MIMAT0027919 | mmu-miR-7007-3p | 8 | _...... | 3 | 85 |
| MIMAT0027794 | mmu-miR-6947-5p | 6 | _...... | 1 | 85 |
| MIMAT0027712 | mmu-miR-6906-5p | 2 | _...... | 7 | 85 |
| MIMAT0027598 | hsa-miR-6849-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027389 | hsa-miR-6744-5p | 1 | _...... | 6 | 85 |
| MIMAT0025544 | bta-miR-3956 | 3 | ......_ | 8 | 85 |
| MIMAT0025189 | ptc-miR6463 | 1 | _...... | 6 | 85 |
| MIMAT0024790 | hbr-miR6171 | 3 | ......_ | 8 | 85 |
| MIMAT0024548 | cca-miR6110-3p | 6 | ......_ | 1 | 85 |
| MIMAT0024070 | ptr-miR-3165 | 3 | ......_ | 8 | 85 |
| MIMAT0023489 | hco-miR-5979 | 1 | _...... | 6 | 85 |
| MIMAT0023253 | osa-miR5788 | 1 | _...... | 6 | 85 |
| MIMAT0022099 | aca-miR-5466 | 1 | _...... | 6 | 85 |
| MIMAT0022085 | aca-miR-5458 | 8 | ......_ | 3 | 85 |
| MIMAT0022069 | aca-miR-5447 | 3 | ......_ | 8 | 85 |
| MIMAT0021945 | aca-miR-363-5p | 1 | ......_ | 6 | 85 |
| MIMAT0021604 | gma-miR862b | 3 | _...... | 8 | 85 |
| MIMAT0021564 | asu-miR-44b-5p | 3 | _...... | 8 | 85 |
| MIMAT0021455 | asu-miR-44a-5p | 2 | _...... | 7 | 85 |
| MIMAT0019914 | hsa-miR-4764-5p | 1 | _...... | 6 | 85 |
| MIMAT0019889 | hsa-miR-4752 | 3 | ......_ | 8 | 85 |
| MIMAT0019279 | oar-miR-376c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018522 | ame-miR-3752 | 1 | ......_ | 6 | 85 |
| MIMAT0018108 | hsa-miR-3681-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016934 | bta-miR-3578 | 8 | ......_ | 3 | 85 |
| MIMAT0017960 | ssc-miR-376c | 1 | ......_ | 6 | 85 |
| MIMAT0016663 | cin-miR-4087-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017903 | rno-miR-3595 | 1 | ......_ | 6 | 85 |
| MIMAT0016278 | sja-miR-2d-5p | 8 | _...... | 3 | 85 |
| MIMAT0016274 | sja-miR-3479-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016185 | ppy-miR-1261 | 1 | ......_ | 6 | 85 |
| MIMAT0015707 | nvi-miR-3478 | 3 | _...... | 8 | 85 |
| MIMAT0017740 | ath-miR774b-3p | 6 | _...... | 1 | 85 |
| MIMAT0017706 | aly-miR3437-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015039 | hsa-miR-3165 | 3 | ......_ | 8 | 85 |
| MIMAT0014949 | mmu-miR-3109-5p | 3 | _...... | 8 | 85 |
| MIMAT0026972 | tgu-miR-363-5p | 1 | ......_ | 6 | 85 |
| MIMAT0020364 | ath-miR2934-3p | 6 | _...... | 1 | 85 |
| MIMAT0015324 | zma-miR169m-3p | 8 | _...... | 3 | 85 |
| MIMAT0017384 | ssc-miR-432-3p | 1 | _...... | 6 | 85 |
| MIMAT0012924 | eca-miR-1261 | 1 | ......_ | 6 | 85 |
| MIMAT0013260 | mtr-miR2589 | 8 | _...... | 3 | 85 |
| MIMAT0012356 | dps-miR-2548-5p | 3 | ......_ | 8 | 85 |
| MIMAT0011945 | bta-miR-2392 | 2 | _...... | 7 | 85 |
| MIMAT0011625 | crm-miR-2228 | 7 | _...... | 2 | 85 |
| MIMAT0011587 | crm-miR-44-5p | 2 | _...... | 7 | 85 |
| MIMAT0011577 | crm-miR-45-5p | 2 | _...... | 7 | 85 |
| MIMAT0009947 | bta-miR-376c | 1 | ......_ | 6 | 85 |
| MIMAT0009888 | cfa-miR-376c | 1 | ......_ | 6 | 85 |
| MIMAT0007828 | osa-miR1874-3p | 3 | _...... | 8 | 85 |
| MIMAT0026874 | mml-miR-432-3p | 1 | _...... | 6 | 85 |
| MIMAT0026863 | mml-miR-376c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0007644 | gga-miR-1740-3p | 7 | _...... | 2 | 85 |
| MIMAT0007635 | gga-miR-1733 | 2 | _...... | 7 | 85 |
| MIMAT0005210 | ppt-miR1078 | 3 | _...... | 8 | 85 |
| MIMAT0012127 | sme-miR-756-3p | 6 | _...... | 1 | 85 |
| MIMAT0003916 | ppt-miR1221-5p | 1 | _...... | 6 | 85 |
| MIMAT0003195 | rno-miR-376b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017219 | rno-miR-376c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0005295 | mmu-miR-376c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0002815 | hsa-miR-432-3p | 2 | _...... | 7 | 85 |
| MIMAT0001583 | hcmv-miR-US25-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003388 | mmu-miR-376b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0020915 | osa-miR319a-3p | 3 | _...... | 8 | 85 |
| MIMAT0015114 | cel-miR-238-5p | 1 | _...... | 6 | 85 |
| MIMAT0020772 | cel-miR-45-5p | 2 | _...... | 7 | 85 |
| MIMAT0020771 | cel-miR-44-5p | 2 | _...... | 7 | 85 |
