| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtgggcg | 7 | ||
| MIMAT0031769 | hbv-miR-B19-5p | 1 | ....... | 7 | 100 |
| MIMAT0029822 | mmu-miR-7658-5p | 2 | ....... | 8 | 100 |
| MIMAT0024229 | ggo-miR-1228 | 1 | ....... | 7 | 100 |
| MIMAT0023560 | tca-miR-6009-3p | 1 | ....... | 7 | 100 |
| MIMAT0021572 | asu-miR-5356a-5p | 8 | ....... | 2 | 100 |
| MIMAT0007688 | gga-miR-1777 | 1 | ....... | 7 | 100 |
| MIMAT0005582 | hsa-miR-1228-5p | 1 | ....... | 7 | 100 |
| MIMAT0037235 | ata-miR394-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035438 | sly-miR394-3p | 3 | ......_ | 8 | 85 |
| MIMAT0034543 | eca-miR-9003 | 6 | ......_ | 1 | 85 |
| MIMAT0032833 | cel-miR-8208-5p | 8 | _...... | 3 | 85 |
| MIMAT0029878 | mmu-miR-3620-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029816 | mmu-miR-7655-5p | 8 | ......_ | 3 | 85 |
| MIMAT0031033 | mdo-miR-1544e-5p | 7 | _...... | 2 | 85 |
| MIMAT0027359 | hsa-miR-6729-5p | 1 | _...... | 6 | 85 |
| MIMAT0025401 | tgu-miR-1669 | 1 | ......_ | 6 | 85 |
| MIMAT0025143 | mmu-miR-6393 | 8 | ......_ | 3 | 85 |
| MIMAT0025106 | mmu-miR-6362 | 1 | ......_ | 6 | 85 |
| MIMAT0024238 | ggo-miR-654 | 3 | ......_ | 8 | 85 |
| MIMAT0023574 | tca-miR-6016-3p | 8 | _...... | 3 | 85 |
| MIMAT0019711 | hsa-miR-4649-5p | 1 | _...... | 6 | 85 |
| MIMAT0019324 | oar-miR-541-3p | 3 | ......_ | 8 | 85 |
| MIMAT0019020 | hsa-miR-4486 | 3 | _...... | 8 | 85 |
| MIMAT0018336 | gma-miR394b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018132 | pab-miR3700 | 8 | _...... | 3 | 85 |
| MIMAT0022967 | hsa-miR-3620-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016891 | hsa-miR-4265 | 3 | ......_ | 8 | 85 |
| MIMAT0016873 | hsa-miR-4322 | 3 | ......_ | 8 | 85 |
| MIMAT0016845 | hsa-miR-4296 | 3 | ......_ | 8 | 85 |
| MIMAT0016412 | cin-miR-182-3p | 1 | ......_ | 6 | 85 |
| MIMAT0016087 | ppy-miR-654-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015990 | ppy-miR-541 | 3 | ......_ | 8 | 85 |
| MIMAT0014828 | mmu-miR-3061-5p | 3 | ......_ | 8 | 85 |
| MIMAT0014488 | tgu-miR-2978 | 1 | ......_ | 6 | 85 |
| MIMAT0013168 | eca-miR-541 | 3 | ......_ | 8 | 85 |
| MIMAT0026951 | mml-miR-541-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012321 | dps-miR-2532 | 1 | _...... | 6 | 85 |
| MIMAT0011965 | bta-miR-2407 | 2 | _...... | 7 | 85 |
| MIMAT0009343 | bta-miR-541 | 3 | ......_ | 8 | 85 |
| MIMAT0007767 | osa-miR1847.2 | 8 | ......_ | 3 | 85 |
| MIMAT0006774 | cel-miR-1832a-3p | 1 | _...... | 6 | 85 |
| MIMAT0006495 | mml-miR-654-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007553 | gga-miR-1669 | 1 | ......_ | 6 | 85 |
| MIMAT0007551 | gga-miR-1668-5p | 1 | ......_ | 6 | 85 |
| MIMAT0005957 | osa-miR1423-3p | 8 | _...... | 3 | 85 |
| MIMAT0017317 | rno-miR-770-3p | 1 | ......_ | 6 | 85 |
| MIMAT0005203 | ppt-miR1073-3p | 1 | _...... | 6 | 85 |
| MIMAT0004920 | hsa-miR-541-3p | 3 | ......_ | 8 | 85 |
| MIMAT0009205 | ebv-miR-BART5-3p | 1 | ......_ | 6 | 85 |
| MIMAT0003330 | hsa-miR-654-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003250 | hsa-miR-585-3p | 1 | _...... | 6 | 85 |
| MIMAT0015163 | zma-miR394b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015162 | zma-miR394a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0031907 | ath-miR394b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017125 | rno-miR-134-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020329 | cel-miR-233-5p | 7 | _...... | 2 | 85 |
| MIMAT0016985 | mmu-miR-134-3p | 3 | ......_ | 8 | 85 |
