| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtggggac | 8 | ||
| MIMAT0036566 | tch-miR-491-5p | 2 | ......._ | 8 | 87 |
| MIMAT0036251 | chi-miR-491-5p | 2 | ......._ | 8 | 87 |
| MIMAT0034905 | efu-miR-9272 | 7 | ......._ | 1 | 87 |
| MIMAT0028982 | oan-miR-7417-5p | 8 | ......._ | 2 | 87 |
| MIMAT0027910 | mmu-miR-7003-5p | 2 | ......._ | 8 | 87 |
| MIMAT0027880 | mmu-miR-6989-5p | 2 | _....... | 8 | 87 |
| MIMAT0027520 | hsa-miR-6810-5p | 2 | _....... | 8 | 87 |
| MIMAT0025825 | gga-miR-6622-3p | 2 | ......._ | 8 | 87 |
| MIMAT0025710 | gga-miR-6615-5p | 2 | _....... | 8 | 87 |
| MIMAT0024196 | ggo-miR-491 | 2 | ......._ | 8 | 87 |
| MIMAT0022079 | aca-miR-5453 | 8 | ......._ | 2 | 87 |
| MIMAT0020763 | bdi-miR5054 | 7 | ......._ | 1 | 87 |
| MIMAT0020592 | ssc-miR-491 | 2 | ......._ | 8 | 87 |
| MIMAT0019356 | mmu-miR-3971 | 8 | ......._ | 2 | 87 |
| MIMAT0015911 | ppy-miR-491-5p | 2 | ......._ | 8 | 87 |
| MIMAT0015075 | hsa-miR-3191-3p | 1 | _....... | 7 | 87 |
| MIMAT0031032 | tgu-miR-92-2-5p | 1 | ......._ | 7 | 87 |
| MIMAT0013116 | eca-miR-491-5p | 2 | ......._ | 8 | 87 |
| MIMAT0012884 | peu-miR2916 | 1 | _....... | 7 | 87 |
| MIMAT0009332 | bta-miR-491 | 2 | ......._ | 8 | 87 |
| MIMAT0019130 | tca-miR-317-5p | 1 | _....... | 7 | 87 |
| MIMAT0006352 | mml-miR-491-5p | 2 | ......._ | 8 | 87 |
| MIMAT0003486 | mmu-miR-491-5p | 2 | ......._ | 8 | 87 |
| MIMAT0002807 | hsa-miR-491-5p | 2 | ......._ | 8 | 87 |
| MIMAT0002115 | ath-miR447c-3p | 2 | _....... | 8 | 87 |
| MIMAT0002114 | ath-miR447b | 2 | _....... | 8 | 87 |
| MIMAT0002113 | ath-miR447a-3p | 2 | _....... | 8 | 87 |
| MIMAT0025311 | prv-miR-LLT8 | 1 | ......g. | 8 | 87 |
| MIMAT0011942 | bta-miR-2389 | 1 | .a...... | 8 | 87 |
| MIMAT0006874 | oan-miR-1343-5p | 1 | .a...... | 8 | 87 |
| MIMAT0005581 | mml-miR-1227 | 1 | ......c. | 8 | 87 |
| MIMAT0022941 | hsa-miR-1227-5p | 1 | ......c. | 8 | 87 |
| MIMAT0035750 | rno-miR-5132-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035747 | rno-miR-450b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0034501 | eca-miR-8966 | 2 | __...... | 7 | 75 |
| MIMAT0034147 | gra-miR8735 | 1 | __...... | 6 | 75 |
| MIMAT0033708 | pxy-miR-8498 | 1 | ......__ | 6 | 75 |
| MIMAT0032613 | ssa-miR-30e-3-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032491 | ssa-miR-204-4-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032490 | ssa-miR-204-3-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031616 | bbe-miR-2058-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031551 | ppe-miR8128-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031413 | mmu-miR-8108 | 3 | _......_ | 8 | 75 |
| MIMAT0031394 | mmu-miR-8093 | 2 | _......_ | 7 | 75 |
| MIMAT0031339 | stu-miR408b-5p | 3 | __...... | 8 | 75 |
| MIMAT0031016 | hsa-miR-8089 | 3 | _......_ | 8 | 75 |
| MIMAT0030917 | stu-miR8001b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0029790 | tgu-miR-7645-5p | 6 | __...... | 1 | 75 |
| MIMAT0031050 | mdo-miR-92a-2-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028740 | mdo-miR-7364-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028430 | mmu-miR-7231-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028133 | mmu-miR-7118-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028076 | mmu-miR-7085-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028010 | mmu-miR-7053-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027964 | mmu-miR-7030-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027914 | mmu-miR-7005-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027902 | mmu-miR-7000-5p | 2 | __...... | 7 | 75 |
| MIMAT0027862 | mmu-miR-6980-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027852 | mmu-miR-6975-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027614 | hsa-miR-6857-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027572 | hsa-miR-6780b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027550 | hsa-miR-6825-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027492 | hsa-miR-6796-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027487 | hsa-miR-6793-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027426 | hsa-miR-6763-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027385 | hsa-miR-6742-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025554 | bta-miR-6525 | 2 | _......_ | 7 | 75 |
| MIMAT0025099 | mmu-miR-6356 | 6 | _......_ | 1 | 75 |
| MIMAT0024938 | hme-miR-133 | 8 | __...... | 3 | 75 |
| MIMAT0024867 | osa-miR6246 | 2 | _......_ | 7 | 75 |
| MIMAT0024820 | hvu-miR6194 | 3 | _......_ | 8 | 75 |
| MIMAT0024575 | bta-miR-4286 | 7 | ......__ | 2 | 75 |
| MIMAT0024333 | mml-miR-4667 | 3 | _......_ | 8 | 75 |
| MIMAT0027114 | mml-miR-1296-3p | 3 | ......__ | 8 | 75 |
| MIMAT0024259 | ggo-miR-3151 | 2 | ......__ | 7 | 75 |
| MIMAT0024250 | ggo-miR-2110 | 2 | _......_ | 7 | 75 |
| MIMAT0024060 | ptr-miR-4667 | 3 | _......_ | 8 | 75 |
| MIMAT0024031 | ptr-miR-3151 | 2 | ......__ | 7 | 75 |
| MIMAT0023366 | hco-miR-5910 | 8 | _......_ | 3 | 75 |
| MIMAT0022560 | ola-miR-133-3p | 8 | __...... | 3 | 75 |
| MIMAT0023004 | rgl-miR164 | 1 | _......_ | 6 | 75 |
| MIMAT0022241 | sbi-miR5564a | 1 | _......_ | 6 | 75 |
| MIMAT0022078 | aca-miR-5408c-3p | 2 | _......_ | 7 | 75 |
| MIMAT0020764 | sly-miR5300 | 6 | _......_ | 1 | 75 |
| MIMAT0020643 | mmu-miR-5132-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020640 | mmu-miR-5129-5p | 3 | ......__ | 8 | 75 |
| MIMAT0022986 | mmu-miR-3572-5p | 1 | _......_ | 6 | 75 |
| MIMAT0021074 | gma-miR5043 | 7 | __...... | 2 | 75 |
| MIMAT0020030 | sko-miR-4825-5p | 1 | __...... | 6 | 75 |
| MIMAT0019904 | hsa-miR-4758-3p | 8 | ......__ | 3 | 75 |
| MIMAT0019844 | hsa-miR-4725-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019796 | hsa-miR-4700-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027038 | hsa-miR-1343-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019743 | hsa-miR-4667-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019716 | hsa-miR-4652-5p | 2 | __...... | 7 | 75 |
| MIMAT0019622 | pma-miR-4589 | 1 | ......__ | 6 | 75 |
| MIMAT0018999 | hsa-miR-4472 | 2 | ......__ | 7 | 75 |
| MIMAT0018971 | hsa-miR-4450 | 1 | _......_ | 6 | 75 |
| MIMAT0018966 | hsa-miR-4447 | 2 | ......__ | 7 | 75 |
| MIMAT0018790 | tca-miR-3859-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017976 | ssc-miR-1296-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016916 | hsa-miR-4286 | 7 | ......__ | 2 | 75 |
| MIMAT0016895 | hsa-miR-2355-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016238 | ppy-miR-1909 | 2 | ......__ | 7 | 75 |
| MIMAT0016199 | ppy-miR-1275 | 1 | ......__ | 6 | 75 |
| MIMAT0016159 | ppy-miR-1224-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016139 | ppy-miR-939 | 1 | _......_ | 6 | 75 |
| MIMAT0016053 | ppy-miR-612 | 3 | _......_ | 8 | 75 |
| MIMAT0015024 | hsa-miR-3151-5p | 2 | ......__ | 7 | 75 |
| MIMAT0015023 | hsa-miR-3150a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015014 | hsa-miR-3144-5p | 2 | __...... | 7 | 75 |
| MIMAT0014831 | mmu-miR-3062-3p | 2 | __...... | 7 | 75 |
| MIMAT0014474 | tgu-miR-2954-3p | 8 | _......_ | 3 | 75 |
| MIMAT0014448 | gga-miR-2954 | 8 | _......_ | 3 | 75 |
| MIMAT0019189 | rlcv-miR-rL1-22-5p | 2 | ......__ | 7 | 75 |
| MIMAT0013847 | bta-miR-2889 | 6 | __...... | 1 | 75 |
| MIMAT0013846 | bta-miR-2888 | 2 | ......__ | 7 | 75 |
| MIMAT0011839 | bta-miR-1343-5p | 1 | _......_ | 6 | 75 |
| MIMAT0011735 | ppc-miR-2247 | 8 | _......_ | 3 | 75 |
| MIMAT0010133 | hsa-miR-2110 | 2 | _......_ | 7 | 75 |
| MIMAT0019167 | bfl-miR-2058-3p | 3 | ......__ | 8 | 75 |
| MIMAT0009484 | bfl-miR-133 | 8 | __...... | 3 | 75 |
| MIMAT0008346 | ptr-miR-939 | 1 | _......_ | 6 | 75 |
| MIMAT0007996 | ptr-miR-1275 | 1 | ......__ | 6 | 75 |
| MIMAT0015267 | cel-miR-1829a-5p | 3 | __...... | 8 | 75 |
| MIMAT0006540 | mml-miR-939 | 1 | _......_ | 6 | 75 |
| MIMAT0006464 | mml-miR-612 | 2 | _......_ | 7 | 75 |
| MIMAT0031019 | mml-miR-450a-2-3p | 3 | _......_ | 8 | 75 |
| MIMAT0026837 | mml-miR-194-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026809 | mml-miR-92a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0007457 | gga-miR-1594 | 3 | ......__ | 8 | 75 |
| MIMAT0007211 | oan-miR-1404 | 2 | _......_ | 7 | 75 |
| MIMAT0006857 | oan-miR-92a-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005929 | hsa-miR-1275 | 1 | ......__ | 6 | 75 |
| MIMAT0005594 | mml-miR-1239 | 7 | _......_ | 2 | 75 |
| MIMAT0005571 | mml-miR-1224-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005569 | ptr-miR-1224-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004982 | hsa-miR-939-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004410 | rrv-miR-rR1-4-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017231 | mmu-miR-1224-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026637 | hsa-miR-1296-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005459 | hsa-miR-1224-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032008 | dre-miR-139-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004789 | mmu-miR-450a-2-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031074 | hsa-miR-450a-2-3p | 3 | _......_ | 8 | 75 |
| MIMAT0002244 | mml-miR-133a | 8 | __...... | 3 | 75 |
| MIMAT0002242 | ppy-miR-133a | 8 | __...... | 3 | 75 |
| MIMAT0017108 | rno-miR-92a-2-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004635 | mmu-miR-92a-2-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004508 | hsa-miR-92a-2-5p | 3 | ......__ | 8 | 75 |
