| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtggtac | 7 | ||
| MIMAT0029844 | mmu-miR-7669-5p | 8 | ....... | 2 | 100 |
| MIMAT0004451 | mdv2-miR-M14-5p | 2 | ....... | 8 | 100 |
| MIMAT0037129 | ata-miR9672-3p | 6 | ......_ | 1 | 85 |
| MIMAT0036984 | tae-miR9672b | 6 | ......_ | 1 | 85 |
| MIMAT0036720 | oha-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0035095 | efu-miR-9186c | 7 | _...... | 2 | 85 |
| MIMAT0035047 | efu-miR-9186a | 7 | _...... | 2 | 85 |
| MIMAT0035022 | efu-miR-9186b | 7 | _...... | 2 | 85 |
| MIMAT0034804 | efu-miR-9213 | 1 | _...... | 6 | 85 |
| MIMAT0034804 | efu-miR-9213 | 8 | _...... | 3 | 85 |
| MIMAT0034003 | gra-miR8645 | 2 | _...... | 7 | 85 |
| MIMAT0033032 | ppc-miR-8270-5p | 3 | _...... | 8 | 85 |
| MIMAT0032360 | ssa-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030884 | stu-miR7996c | 3 | ......_ | 8 | 85 |
| MIMAT0030883 | stu-miR7996b | 3 | ......_ | 8 | 85 |
| MIMAT0030882 | stu-miR7996a | 3 | ......_ | 8 | 85 |
| MIMAT0029536 | ipu-miR-7147 | 7 | _...... | 2 | 85 |
| MIMAT0028880 | mdo-miR-7391-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028464 | mdo-miR-7249-5p | 3 | _...... | 8 | 85 |
| MIMAT0028205 | dre-miR-7147 | 7 | _...... | 2 | 85 |
| MIMAT0026221 | ccr-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025830 | gga-miR-458b-5p | 7 | _...... | 2 | 85 |
| MIMAT0025350 | pde-miR1313 | 6 | ......_ | 1 | 85 |
| MIMAT0027333 | ppe-miR6291b | 8 | ......_ | 3 | 85 |
| MIMAT0027326 | ppe-miR6291a | 8 | ......_ | 3 | 85 |
| MIMAT0024302 | ggo-miR-624 | 8 | _...... | 3 | 85 |
| MIMAT0023558 | tca-miR-6008-3p | 8 | ......_ | 3 | 85 |
| MIMAT0022269 | hsa-miR-5579-5p | 3 | _...... | 8 | 85 |
| MIMAT0021785 | aca-miR-150-3p | 2 | _...... | 7 | 85 |
| MIMAT0021766 | aca-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0020187 | dme-miR-4964-3p | 1 | _...... | 6 | 85 |
| MIMAT0019655 | pma-miR-4621 | 6 | _...... | 1 | 85 |
| MIMAT0018279 | gma-miR4375 | 6 | ......_ | 1 | 85 |
| MIMAT0018797 | tca-miR-3861-3p | 2 | _...... | 7 | 85 |
| MIMAT0016187 | ppy-miR-1263 | 2 | _...... | 7 | 85 |
| MIMAT0015764 | ppy-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015480 | bmo-miR-3293 | 1 | _...... | 6 | 85 |
| MIMAT0014921 | mmu-miR-3101-5p | 7 | _...... | 2 | 85 |
| MIMAT0014642 | tgu-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0012927 | eca-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0012851 | rno-miR-547-3p | 3 | _...... | 8 | 85 |
| MIMAT0026937 | mdo-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0013712 | bmo-miR-2808a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0013671 | bmo-miR-2808c | 3 | ......_ | 8 | 85 |
| MIMAT0013287 | mtr-miR2597 | 3 | _...... | 8 | 85 |
| MIMAT0009430 | mmu-miR-1957a | 3 | ......_ | 8 | 85 |
| MIMAT0009130 | pta-miR1313 | 6 | ......_ | 1 | 85 |
| MIMAT0007987 | ptr-miR-1263 | 2 | _...... | 7 | 85 |
| MIMAT0026828 | mml-miR-150-3p | 2 | _...... | 7 | 85 |
| MIMAT0006198 | mml-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0007544 | gga-miR-1663-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007538 | gga-miR-1658-5p | 8 | ......_ | 3 | 85 |
| MIMAT0007091 | oan-miR-150-3p | 3 | _...... | 8 | 85 |
| MIMAT0006813 | oan-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005915 | hsa-miR-1263 | 2 | _...... | 7 | 85 |
| MIMAT0003789 | bta-miR-140 | 6 | ......_ | 1 | 85 |
| MIMAT0003293 | hsa-miR-624-5p | 8 | _...... | 3 | 85 |
| MIMAT0003173 | mmu-miR-547-3p | 3 | _...... | 8 | 85 |
| MIMAT0006786 | ssc-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003159 | dre-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017133 | rno-miR-150-3p | 2 | _...... | 7 | 85 |
| MIMAT0000574 | rno-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004610 | hsa-miR-150-3p | 2 | _...... | 7 | 85 |
| MIMAT0004597 | hsa-miR-140-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004535 | mmu-miR-150-3p | 2 | _...... | 7 | 85 |
| MIMAT0000152 | mmu-miR-140-3p | 6 | ......_ | 1 | 85 |
