| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtgtatc | 7 | ||
| MIMAT0034149 | gra-miR8737 | 1 | ....... | 7 | 100 |
| MIMAT0024856 | rno-miR-6216 | 7 | ....... | 1 | 100 |
| MIMAT0011319 | mtr-miR2199 | 8 | ....... | 2 | 100 |
| MIMAT0003926 | mdv1-miR-M5-3p | 2 | ....... | 8 | 100 |
| MIMAT0020844 | dme-miR-318-5p | 8 | ....... | 2 | 100 |
| MIMAT0036852 | oha-miR-223-5p | 1 | ......_ | 6 | 85 |
| MIMAT0036401 | gma-miR9764 | 8 | _...... | 3 | 85 |
| MIMAT0032773 | ath-miR8174 | 3 | ......_ | 8 | 85 |
| MIMAT0030189 | bdi-miR7728-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028774 | mdo-miR-7371b-5p | 3 | _...... | 8 | 85 |
| MIMAT0023098 | tur-miR-137-5p | 1 | ......_ | 6 | 85 |
| MIMAT0020573 | bdi-miR5066 | 3 | ......_ | 8 | 85 |
| MIMAT0020515 | dme-miR-4909-3p | 3 | _...... | 8 | 85 |
| MIMAT0020035 | sko-miR-4827b | 3 | ......_ | 8 | 85 |
| MIMAT0019959 | hsa-miR-4789-5p | 8 | ......_ | 3 | 85 |
| MIMAT0019341 | mmu-miR-3963 | 1 | _...... | 6 | 85 |
| MIMAT0018366 | far-miR1122 | 8 | _...... | 3 | 85 |
| MIMAT0018762 | tca-miR-3853-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018699 | tca-miR-iab-8-3p | 8 | _...... | 3 | 85 |
| MIMAT0017936 | aly-miR4247 | 1 | _...... | 6 | 85 |
| MIMAT0016584 | cin-miR-4047-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015002 | hsa-miR-466 | 6 | ......_ | 1 | 85 |
| MIMAT0014547 | tgu-miR-2991 | 2 | _...... | 7 | 85 |
| MIMAT0012505 | dsi-miR-iab-8-3p | 8 | _...... | 3 | 85 |
| MIMAT0012493 | dsi-miR-137-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012365 | dps-miR-2552-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012285 | dps-miR-iab-8-3p | 8 | _...... | 3 | 85 |
| MIMAT0012237 | dps-miR-137-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012183 | bdi-miR1122 | 8 | _...... | 3 | 85 |
| MIMAT0011841 | bta-miR-2318 | 1 | ......_ | 6 | 85 |
| MIMAT0019117 | tca-miR-137-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007069 | oan-miR-1421l-1-3p | 1 | _...... | 6 | 85 |
| MIMAT0005846 | mmu-miR-467f | 8 | ......_ | 3 | 85 |
| MIMAT0005834 | mmu-miR-466i-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005357 | tae-miR1122a | 8 | _...... | 3 | 85 |
| MIMAT0020888 | dme-miR-137-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005464 | dme-miR-iab-8-3p | 7 | _...... | 2 | 85 |
| MIMAT0026682 | mdo-miR-223-5p | 1 | ......_ | 6 | 85 |
| MIMAT0000304 | cel-miR-248 | 6 | ......_ | 1 | 85 |
