| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taaagggt | 8 | ||
| MIMAT0014065 | rlcv-miR-rL1-20-5p | 1 | ........ | 8 | 100 |
| MIMAT0033677 | sma-miR-8478-5p | 1 | _....... | 7 | 87 |
| MIMAT0032671 | ssa-miR-724-5p | 2 | ......._ | 8 | 87 |
| MIMAT0029522 | ipu-miR-724 | 2 | ......._ | 8 | 87 |
| MIMAT0026311 | ccr-miR-724 | 2 | ......._ | 8 | 87 |
| MIMAT0027565 | hsa-miR-6832-3p | 7 | _....... | 1 | 87 |
| MIMAT0022363 | mmu-miR-5618-5p | 8 | _....... | 2 | 87 |
| MIMAT0022183 | cel-miR-5546-5p | 7 | _....... | 1 | 87 |
| MIMAT0015999 | ppy-miR-553 | 2 | _....... | 8 | 87 |
| MIMAT0003752 | dre-miR-724 | 2 | ......._ | 8 | 87 |
| MIMAT0019939 | hsa-miR-4780 | 8 | .c...... | 1 | 87 |
| MIMAT0016483 | cin-miR-4006f-3p | 8 | .t...... | 1 | 87 |
| MIMAT0012210 | dme-miR-2498-5p | 1 | ......c. | 8 | 87 |
| MIMAT0037020 | ssc-miR-9802-3p | 3 | __...... | 8 | 75 |
| MIMAT0036812 | oha-miR-204-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036689 | oha-miR-130b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036687 | oha-miR-130a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036351 | gma-miR9732 | 2 | __...... | 7 | 75 |
| MIMAT0036057 | chi-miR-211 | 8 | _......_ | 3 | 75 |
| MIMAT0036050 | chi-miR-204-5p | 8 | _......_ | 3 | 75 |
| MIMAT0035298 | gsa-miR-2d-5p | 6 | __...... | 1 | 75 |
| MIMAT0035294 | gsa-miR-278-5p | 3 | __...... | 8 | 75 |
| MIMAT0034989 | efu-miR-9314 | 8 | __...... | 3 | 75 |
| MIMAT0034964 | efu-miR-211 | 8 | _......_ | 3 | 75 |
| MIMAT0033056 | ppc-miR-8278-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032993 | ppc-miR-8250d-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032991 | ppc-miR-8250c-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032488 | ssa-miR-204-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032330 | ssa-miR-130d-3-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032329 | ssa-miR-130d-2-5p | 7 | _......_ | 2 | 75 |
| MIMAT0032324 | ssa-miR-130b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030651 | prd-miR-7912-3p | 1 | ......__ | 6 | 75 |
| MIMAT0030171 | bdi-miR7722-3p | 2 | __...... | 7 | 75 |
| MIMAT0029883 | mmu-miR-7681-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029847 | mmu-miR-7670-3p | 8 | _......_ | 3 | 75 |
| MIMAT0029459 | ipu-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0029404 | ipu-miR-130c | 7 | _......_ | 2 | 75 |
| MIMAT0028595 | mdo-miR-1643a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031110 | mdo-miR-130c-2-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028556 | mdo-miR-7287-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028514 | mdo-miR-130c-1-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027792 | mmu-miR-6946-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027751 | mmu-miR-6925-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027313 | ppe-miR6283 | 3 | _......_ | 8 | 75 |
| MIMAT0024541 | cca-miR6107 | 1 | _......_ | 6 | 75 |
| MIMAT0023844 | cgr-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0023562 | tca-miR-6010-3p | 2 | __...... | 7 | 75 |
| MIMAT0023382 | hco-miR-5913 | 2 | ......__ | 7 | 75 |
| MIMAT0023298 | osa-miR1319b | 6 | ......__ | 1 | 75 |
| MIMAT0022589 | ola-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0022469 | hsa-miR-5681a | 3 | _......_ | 8 | 75 |
| MIMAT0022030 | aca-miR-5412-5p | 1 | __...... | 6 | 75 |
| MIMAT0021853 | aca-miR-204a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0021066 | gma-miR5039 | 6 | _......_ | 1 | 75 |
| MIMAT0019515 | pma-miR-204-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019454 | pma-miR-130a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019046 | hsa-miR-4509 | 3 | ......__ | 8 | 75 |
| MIMAT0018170 | mghv-miR-M1-12-5p | 1 | __...... | 6 | 75 |
| MIMAT0017889 | rno-miR-3590-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016276 | sja-miR-2c-5p | 6 | __...... | 1 | 75 |
| MIMAT0015436 | bmo-miR-3253 | 8 | ......__ | 3 | 75 |
| MIMAT0015423 | bmo-miR-3241 | 2 | ......__ | 7 | 75 |
| MIMAT0014910 | mmu-miR-3094-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027012 | tgu-miR-130c-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027006 | tgu-miR-130a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0014570 | tgu-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0014463 | tgu-miR-2963-3p | 2 | _......_ | 7 | 75 |
| MIMAT0014351 | hsv2-miR-H7-5p | 1 | _......_ | 6 | 75 |
| MIMAT0013112 | eca-miR-204b | 8 | _......_ | 3 | 75 |
| MIMAT0012901 | eca-miR-211 | 8 | _......_ | 3 | 75 |
| MIMAT0013732 | bmo-miR-2780b | 1 | __...... | 6 | 75 |
| MIMAT0013669 | bmo-miR-2780a-5p | 1 | __...... | 6 | 75 |
| MIMAT0012595 | hsv1-miR-H7-5p | 1 | _......_ | 6 | 75 |
| MIMAT0013301 | mtr-miR2598 | 3 | __...... | 8 | 75 |
| MIMAT0012492 | dsi-miR-992-3p | 6 | _......_ | 1 | 75 |
| MIMAT0011174 | pvu-miR2119 | 3 | _......_ | 8 | 75 |
| MIMAT0011168 | mtr-miR2119 | 3 | _......_ | 8 | 75 |
| MIMAT0011167 | gma-miR2119 | 3 | _......_ | 8 | 75 |
| MIMAT0009867 | cfa-miR-211 | 8 | _......_ | 3 | 75 |
| MIMAT0009458 | mmu-miR-1981-5p | 2 | ......__ | 7 | 75 |
| MIMAT0009446 | mmu-miR-1971 | 2 | ......__ | 7 | 75 |
| MIMAT0009263 | bta-miR-211 | 8 | _......_ | 3 | 75 |
| MIMAT0008071 | ptr-miR-211 | 8 | _......_ | 3 | 75 |
| MIMAT0006598 | cfa-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0006235 | mml-miR-204-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007733 | gga-miR-130c-5p | 7 | _......_ | 2 | 75 |
| MIMAT0007430 | gga-miR-1570 | 2 | __...... | 7 | 75 |
| MIMAT0007391 | gma-miR1529 | 2 | ......__ | 7 | 75 |
| MIMAT0007201 | oan-miR-1398-5p | 7 | _......_ | 2 | 75 |
| MIMAT0007158 | oan-miR-130b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0006907 | oan-miR-130c-5p | 7 | _......_ | 2 | 75 |
| MIMAT0006841 | oan-miR-204-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005263 | smo-miR1106 | 3 | ......__ | 8 | 75 |
| MIMAT0005080 | ppt-miR902h-3p | 3 | __...... | 8 | 75 |
| MIMAT0004338 | bta-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0004127 | mdo-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0003696 | xtr-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0003368 | gga-miR-211 | 8 | _......_ | 3 | 75 |
| MIMAT0017211 | rno-miR-540-5p | 2 | __...... | 7 | 75 |
| MIMAT0004786 | mmu-miR-540-5p | 2 | __...... | 7 | 75 |
| MIMAT0003102 | tni-miR-204a | 8 | _......_ | 3 | 75 |
| MIMAT0003101 | fru-miR-204a | 8 | _......_ | 3 | 75 |
| MIMAT0002935 | tni-miR-204b | 8 | _......_ | 3 | 75 |
| MIMAT0002549 | mne-miR-211 | 8 | _......_ | 3 | 75 |
| MIMAT0002548 | ppy-miR-211 | 8 | _......_ | 3 | 75 |
| MIMAT0002547 | mml-miR-211 | 8 | _......_ | 3 | 75 |
| MIMAT0002540 | ppa-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0002539 | mne-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0002538 | sla-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0002537 | ppy-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0002536 | ggo-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0002535 | ptr-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0002164 | ssc-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0031969 | dre-miR-130c-5p | 7 | _......_ | 2 | 75 |
| MIMAT0001279 | dre-miR-204-5p | 8 | _......_ | 3 | 75 |
| MIMAT0026532 | gga-miR-130a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0001156 | gga-miR-204 | 8 | _......_ | 3 | 75 |
| MIMAT0000882 | rno-miR-211-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000877 | rno-miR-204-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000668 | mmu-miR-211-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000576 | rno-miR-336-5p | 8 | __...... | 3 | 75 |
| MIMAT0000268 | hsa-miR-211-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000265 | hsa-miR-204-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000237 | mmu-miR-204-5p | 8 | _......_ | 3 | 75 |
