| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taaatagc | 8 | ||
| MIMAT0012871 | hvt-miR-H16-3p | 1 | ........ | 8 | 100 |
| MIMAT0009817 | nve-miR-2046-3p | 1 | ........ | 8 | 100 |
| MIMAT0036712 | oha-miR-138-2-3p | 7 | _....... | 1 | 87 |
| MIMAT0032353 | ssa-miR-138-3p | 7 | _....... | 1 | 87 |
| MIMAT0024396 | ppy-miR-3121 | 1 | ......._ | 7 | 87 |
| MIMAT0024061 | ptr-miR-3121 | 1 | ......._ | 7 | 87 |
| MIMAT0022387 | ath-miR5628 | 2 | _....... | 8 | 87 |
| MIMAT0021758 | aca-miR-138-1-3p | 7 | _....... | 1 | 87 |
| MIMAT0014983 | hsa-miR-3121-3p | 1 | ......._ | 7 | 87 |
| MIMAT0031021 | tgu-miR-138-2-3p | 7 | _....... | 1 | 87 |
| MIMAT0007220 | oan-miR-138-3p | 7 | _....... | 1 | 87 |
| MIMAT0031973 | dre-miR-138-3p | 7 | _....... | 1 | 87 |
| MIMAT0017127 | rno-miR-138-2-3p | 7 | _....... | 1 | 87 |
| MIMAT0004596 | hsa-miR-138-2-3p | 7 | _....... | 1 | 87 |
| MIMAT0020336 | cel-miR-245-5p | 7 | _....... | 1 | 87 |
| MIMAT0016987 | mmu-miR-138-2-3p | 7 | _....... | 1 | 87 |
| MIMAT0032820 | cel-miR-8203-3p | 1 | ......c. | 8 | 87 |
| MIMAT0028851 | mdo-miR-7386d-3p | 1 | ......c. | 8 | 87 |
| MIMAT0024969 | hme-miR-283 | 1 | ......t. | 8 | 87 |
| MIMAT0009064 | dya-miR-283 | 1 | ......t. | 8 | 87 |
| MIMAT0009014 | dwi-miR-283 | 1 | ......t. | 8 | 87 |
| MIMAT0008893 | dsi-miR-283 | 1 | ......t. | 8 | 87 |
| MIMAT0008838 | dse-miR-283 | 1 | ......t. | 8 | 87 |
| MIMAT0008713 | dpe-miR-283 | 1 | ......t. | 8 | 87 |
| MIMAT0008640 | dmo-miR-283 | 1 | ......t. | 8 | 87 |
| MIMAT0008618 | dgr-miR-283 | 1 | ......t. | 8 | 87 |
| MIMAT0008480 | der-miR-283 | 1 | ......t. | 8 | 87 |
| MIMAT0008437 | dan-miR-283 | 1 | ......t. | 8 | 87 |
| MIMAT0004206 | bmo-miR-283-5p | 1 | ......t. | 8 | 87 |
| MIMAT0001515 | aga-miR-283 | 1 | ......t. | 8 | 87 |
| MIMAT0001247 | dps-miR-283 | 1 | ......t. | 8 | 87 |
| MIMAT0037084 | ssc-miR-9862-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036776 | oha-miR-190b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035414 | nve-miR-9453 | 8 | __...... | 3 | 75 |
| MIMAT0035075 | efu-miR-8908 | 6 | ......__ | 1 | 75 |
| MIMAT0034703 | eca-miR-8908n | 6 | ......__ | 1 | 75 |
| MIMAT0033906 | atr-miR8614 | 2 | __...... | 7 | 75 |
| MIMAT0033829 | atr-miR8557 | 3 | _......_ | 8 | 75 |
| MIMAT0033649 | sma-miR-8465-5p | 3 | __...... | 8 | 75 |
| MIMAT0033391 | str-miR-8374-3p | 1 | ......__ | 6 | 75 |
| MIMAT0033242 | ppc-miR-8347-5p | 8 | __...... | 3 | 75 |
| MIMAT0032961 | ppc-miR-8248-3p | 1 | __...... | 6 | 75 |
| MIMAT0032439 | ssa-miR-190b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031390 | mmu-miR-3473f | 2 | _......_ | 7 | 75 |
| MIMAT0030275 | bdi-miR7764-3p | 1 | _......_ | 6 | 75 |
| MIMAT0030204 | bdi-miR7717c-5p | 8 | __...... | 3 | 75 |
| MIMAT0030169 | bdi-miR7717b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030020 | hsa-miR-7705 | 1 | __...... | 6 | 75 |
| MIMAT0029880 | mmu-miR-465d-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028875 | mdo-miR-7388c-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028711 | mdo-miR-7349-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028672 | mdo-miR-7332-5p | 2 | __...... | 7 | 75 |
| MIMAT0025265 | ptc-miR6455 | 3 | _......_ | 8 | 75 |
| MIMAT0024797 | hvu-miR5049b | 8 | ......__ | 3 | 75 |
| MIMAT0023020 | bra-miR5722 | 3 | _......_ | 8 | 75 |
| MIMAT0022110 | pti-miR5477 | 3 | _......_ | 8 | 75 |
| MIMAT0021575 | asu-miR-5356b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020036 | sko-miR-4828a | 3 | ......__ | 8 | 75 |
| MIMAT0019569 | pma-miR-4541 | 8 | ......__ | 3 | 75 |
| MIMAT0018912 | tca-miR-3904-3p | 8 | ......__ | 3 | 75 |
| MIMAT0016824 | cin-miR-4204-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016800 | cin-miR-4184-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016578 | cin-miR-4044-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016473 | cin-miR-4006b-3p | 6 | __...... | 1 | 75 |
| MIMAT0015643 | mmu-miR-3472 | 2 | __...... | 7 | 75 |
| MIMAT0015408 | bmo-miR-3226 | 7 | _......_ | 2 | 75 |
| MIMAT0014671 | hma-miR-3004 | 8 | _......_ | 3 | 75 |
| MIMAT0014426 | cqu-miR-31-3p | 7 | __...... | 2 | 75 |
| MIMAT0012850 | rno-miR-465-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012733 | mdv2-miR-M32-3p | 2 | __...... | 7 | 75 |
| MIMAT0013286 | mtr-miR2596 | 7 | _......_ | 2 | 75 |
| MIMAT0012329 | dps-miR-2537-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012308 | dps-miR-2520 | 1 | __...... | 6 | 75 |
| MIMAT0011896 | bta-miR-2358 | 3 | _......_ | 8 | 75 |
| MIMAT0011784 | dme-miR-2279-5p | 2 | ......__ | 7 | 75 |
| MIMAT0013779 | sme-miR-31b-3p | 7 | __...... | 2 | 75 |
| MIMAT0009828 | nve-miR-2051-5p | 1 | _......_ | 6 | 75 |
| MIMAT0009118 | dya-miR-289 | 1 | ......__ | 6 | 75 |
| MIMAT0009065 | dya-miR-280 | 8 | ......__ | 3 | 75 |
| MIMAT0009028 | dwi-miR-280 | 8 | ......__ | 3 | 75 |
| MIMAT0008965 | dvi-miR-280 | 8 | ......__ | 3 | 75 |
| MIMAT0008873 | dsi-miR-289 | 1 | ......__ | 6 | 75 |
| MIMAT0008807 | dse-miR-289 | 1 | ......__ | 6 | 75 |
| MIMAT0008767 | dse-miR-280 | 8 | ......__ | 3 | 75 |
| MIMAT0008748 | dpe-miR-289 | 1 | ......__ | 6 | 75 |
| MIMAT0008722 | dpe-miR-280 | 8 | ......__ | 3 | 75 |
| MIMAT0008663 | dmo-miR-280 | 8 | ......__ | 3 | 75 |
| MIMAT0008616 | dgr-miR-280 | 8 | ......__ | 3 | 75 |
| MIMAT0008555 | der-miR-289 | 1 | ......__ | 6 | 75 |
| MIMAT0008492 | der-miR-280 | 8 | ......__ | 3 | 75 |
| MIMAT0008466 | dan-miR-289 | 1 | ......__ | 6 | 75 |
| MIMAT0008438 | dan-miR-280 | 8 | ......__ | 3 | 75 |
| MIMAT0015256 | cin-miR-124-1-5p | 8 | ......__ | 3 | 75 |
| MIMAT0005830 | mmu-miR-466l-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005259 | smo-miR1102 | 7 | __...... | 2 | 75 |
| MIMAT0032028 | dme-miR-1008-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020869 | dme-miR-972-5p | 1 | ......__ | 6 | 75 |
| MIMAT0004873 | mmu-miR-465c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004871 | mmu-miR-465b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0011413 | sme-miR-31b-1-3p | 8 | __...... | 3 | 75 |
| MIMAT0002106 | mmu-miR-465a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0001253 | dps-miR-289 | 1 | ......__ | 6 | 75 |
| MIMAT0001244 | dps-miR-280 | 8 | ......__ | 3 | 75 |
| MIMAT0000364 | dme-miR-289-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000343 | dme-miR-280-5p | 8 | ......__ | 3 | 75 |
