VIRmiRNA | Resource for experimental viral miRNA and their targets

Result for your query miRNA sequence
>rlcv-miR-rl1-32-3p
uaaaugcg

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	miRNA	Start	Alignment	End	% Identity
Query		1	`taaatgcg`	8
MIMAT0016958	rlcv-miR-rL1-32-3p	1	`........`	8	100
MIMAT0036555	tch-miR-9771i	1	`_.......`	7	87
MIMAT0035311	gsa-miR-277b-3p	1	`......._`	7	87
MIMAT0035297	gsa-miR-277a-3p	1	`......._`	7	87
MIMAT0034145	gra-miR8771e	8	`......._`	2	87
MIMAT0033785	pxy-miR-277	1	`......._`	7	87
MIMAT0033449	str-miR-8390-3p	1	`......._`	7	87
MIMAT0032739	ssa-miR-734-3p	1	`......._`	7	87
MIMAT0031741	bma-miR-232	1	`......._`	7	87
MIMAT0030811	prd-miR-277-3p	1	`......._`	7	87
MIMAT0029755	cbn-miR-232	1	`......._`	7	87
MIMAT0026318	ccr-miR-734	1	`......._`	7	87
MIMAT0024959	hme-miR-277	1	`......._`	7	87
MIMAT0027334	ppe-miR6266c	1	`......._`	7	87
MIMAT0027324	ppe-miR6266b	1	`......._`	7	87
MIMAT0027290	ppe-miR6266a	1	`......._`	7	87
MIMAT0024443	mse-miR-277	1	`......._`	7	87
MIMAT0021594	asu-miR-5366-5p	1	`......._`	7	87
MIMAT0020272	emu-miR-277	1	`......._`	7	87
MIMAT0020247	egr-miR-277	1	`......._`	7	87
MIMAT0019990	cel-miR-4807	1	`_.......`	7	87
MIMAT0018431	nlo-miR-277	1	`......._`	7	87
MIMAT0018400	ngi-miR-277	1	`......._`	7	87
MIMAT0018021	vvi-miR3629a-5p	7	`_.......`	1	87
MIMAT0016269	sja-miR-277	1	`......._`	7	87
MIMAT0015683	nvi-miR-277	1	`......._`	7	87
MIMAT0014722	api-miR-277	1	`......._`	7	87
MIMAT0014371	cqu-miR-277	1	`......._`	7	87
MIMAT0014211	aae-miR-277-3p	1	`......._`	7	87
MIMAT0013575	cte-miR-277b	1	`......._`	7	87
MIMAT0013531	cte-miR-277a	1	`......._`	7	87
MIMAT0011699	ppc-miR-232	1	`......._`	7	87
MIMAT0011604	crm-miR-357	1	`......._`	7	87
MIMAT0011516	crm-miR-232	1	`......._`	7	87
MIMAT0009099	dya-miR-277	1	`......._`	7	87
MIMAT0009040	dwi-miR-277	1	`......._`	7	87
MIMAT0008946	dvi-miR-277-3p	1	`......._`	7	87
MIMAT0008850	dsi-miR-277	1	`......._`	7	87
MIMAT0008794	dse-miR-277	1	`......._`	7	87
MIMAT0008702	dpe-miR-277	1	`......._`	7	87
MIMAT0008685	dmo-miR-277	1	`......._`	7	87
MIMAT0008556	dgr-miR-277	1	`......._`	7	87
MIMAT0008517	der-miR-277	1	`......._`	7	87
MIMAT0008407	dan-miR-277	1	`......._`	7	87
MIMAT0008382	tca-miR-277-3p	1	`......._`	7	87
MIMAT0004024	sme-miR-277d-3p	1	`......._`	7	87
MIMAT0004010	sme-miR-277c-3p	1	`......._`	7	87
MIMAT0004007	sme-miR-277a-3p	1	`......._`	7	87
MIMAT0012113	sme-miR-124b-5p	8	`......._`	2	87
MIMAT0004203	bmo-miR-277-3p	1	`......._`	7	87
MIMAT0003765	dre-miR-734	2	`......._`	8	87
MIMAT0003426	ebv-miR-BART14-3p	1	`......._`	7	87
MIMAT0001510	aga-miR-277	1	`......._`	7	87
MIMAT0001481	ame-miR-277	1	`......._`	7	87
MIMAT0001241	dps-miR-277	1	`......._`	7	87
MIMAT0031896	cel-lsy-6-5p	1	`_.......`	7	87
MIMAT0000497	cbr-miR-232	1	`......._`	7	87
MIMAT0000338	dme-miR-277-3p	1	`......._`	7	87
MIMAT0000287	cel-miR-232-3p	1	`......._`	7	87
MIMAT0022489	hsa-miR-5696	8	`......a.`	1	87
MIMAT0021143	mtr-miR5210	1	`......t.`	8	87
MIMAT0014668	hma-miR-3003a-3p	1	`......t.`	8	87
MIMAT0036676	oha-miR-126-5p	6	`__......`	1	75
MIMAT0035904	chi-miR-105b-5p	3	`_......_`	8	75
MIMAT0035903	chi-miR-105a	3	`_......_`	8	75
MIMAT0035527	bdi-miR530b	7	`_......_`	2	75
MIMAT0035526	bdi-miR530a	7	`_......_`	2	75
MIMAT0035445	sly-miR5302b-5p	3	`_......_`	8	75
MIMAT0035328	gsa-miR-9392-5p	3	`......__`	8	75
MIMAT0034504	eca-miR-7177a	1	`......__`	6	75
MIMAT0033519	sma-miR-8407-3p	7	`_......_`	2	75
MIMAT0033516	sma-miR-8406-5p	2	`_......_`	7	75
MIMAT0033458	str-miR-8393-5p	7	`_......_`	2	75
MIMAT0032387	ssa-miR-153a-5p	7	`_......_`	2	75
MIMAT0030921	stu-miR8022	3	`......__`	8	75
MIMAT0030794	prd-miR-7954-5p	3	`__......`	8	75
MIMAT0030678	prd-miR-7919-5p	2	`__......`	7	75
MIMAT0030523	prd-miR-7882-3p	6	`__......`	1	75
MIMAT0030428	hsa-miR-7853-5p	3	`_......_`	8	75
MIMAT0030158	bdi-miR7718-5p	7	`......__`	2	75
MIMAT0030015	mtr-miR7701-5p	3	`......__`	8	75
MIMAT0030014	mtr-miR2592br-3p	1	`_......_`	6	75
MIMAT0030012	mtr-miR2592bq-3p	1	`_......_`	6	75
MIMAT0030009	mtr-miR2592bp-5p	1	`_......_`	6	75
MIMAT0030008	mtr-miR2592bo-3p	1	`_......_`	6	75
MIMAT0029742	cbn-miR-357	1	`_......_`	6	75
MIMAT0029299	mes-miR530b	7	`_......_`	2	75
MIMAT0029298	mes-miR530a	7	`_......_`	2	75
MIMAT0028857	mdo-miR-7386f-3p	1	`_......_`	6	75
MIMAT0028693	mdo-miR-7341-3p	1	`_......_`	6	75
MIMAT0028619	mdo-miR-7310-3p	8	`__......`	3	75
MIMAT0028537	mdo-miR-7281-3p	6	`......__`	1	75
MIMAT0028319	mml-miR-7183-3p	6	`_......_`	1	75
MIMAT0026182	cme-miR530a	7	`_......_`	2	75
MIMAT0026104	cme-miR530b	7	`_......_`	2	75
MIMAT0025521	htu-miR530	7	`_......_`	2	75
MIMAT0027169	lus-miR530b	7	`_......_`	2	75
MIMAT0027162	lus-miR530a	7	`_......_`	2	75
MIMAT0023377	hco-miR-277	2	`_......_`	7	75
MIMAT0023209	gma-miR530e	7	`_......_`	2	75
MIMAT0023199	gma-miR530d	7	`_......_`	2	75
MIMAT0023197	gma-miR530c	7	`_......_`	2	75
MIMAT0023156	mtr-miR530	7	`_......_`	2	75
MIMAT0022463	gma-miR530b	7	`_......_`	2	75
MIMAT0022397	ath-miR5637	1	`__......`	6	75
MIMAT0022210	mtr-miR5274b-3p	6	`......__`	1	75
MIMAT0022193	cel-miR-5551-5p	3	`......__`	8	75
MIMAT0021290	mtr-miR5267o	8	`_......_`	3	75
MIMAT0021289	mtr-miR5267n	8	`_......_`	3	75
MIMAT0021288	mtr-miR5267m	8	`_......_`	3	75
MIMAT0021287	mtr-miR5267l	8	`_......_`	3	75
MIMAT0021286	mtr-miR5267k	8	`_......_`	3	75
MIMAT0021285	mtr-miR5267j	8	`_......_`	3	75
MIMAT0021284	mtr-miR5267i	8	`_......_`	3	75
MIMAT0021283	mtr-miR5267h	8	`_......_`	3	75
MIMAT0021282	mtr-miR5267g	8	`_......_`	3	75
MIMAT0021281	mtr-miR5267f	8	`_......_`	3	75
MIMAT0021280	mtr-miR5267e	8	`_......_`	3	75
MIMAT0021279	mtr-miR5267d	8	`_......_`	3	75
MIMAT0021278	mtr-miR5267c	8	`_......_`	3	75
MIMAT0021277	mtr-miR5267b	8	`_......_`	3	75
MIMAT0021276	mtr-miR5267a	8	`_......_`	3	75
MIMAT0021171	mtr-miR2592ao	1	`_......_`	6	75
MIMAT0021170	mtr-miR2592an	1	`_......_`	6	75
MIMAT0021003	gma-miR530a	7	`_......_`	2	75
MIMAT0020275	emu-miR-4989	2	`_......_`	7	75
MIMAT0020250	egr-miR-4989	2	`_......_`	7	75
MIMAT0020192	dme-miR-4967-5p	7	`_......_`	2	75
MIMAT0020162	dme-miR-4950-5p	1	`_......_`	6	75
MIMAT0020093	bfl-miR-4856b-5p	7	`__......`	2	75
MIMAT0020037	sko-miR-4828b	3	`......__`	8	75
MIMAT0020447	tcc-miR530b	7	`_......_`	2	75
MIMAT0020446	tcc-miR530a	7	`_......_`	2	75
MIMAT0019851	hsa-miR-4729	7	`......__`	2	75
MIMAT0019589	pma-miR-4557	1	`_......_`	6	75
MIMAT0018483	csi-miR530b	7	`_......_`	2	75
MIMAT0018482	csi-miR530a	7	`_......_`	2	75
MIMAT0018907	tca-miR-3901-3p	6	`......__`	1	75
MIMAT0018837	tca-miR-3872-3p	7	`_......_`	2	75
MIMAT0018536	ame-miR-3763	8	`__......`	3	75
MIMAT0018142	pab-miR3709b	3	`......__`	8	75
MIMAT0016828	cin-miR-4207-3p	7	`_......_`	2	75
MIMAT0016825	cin-miR-4204-3p	1	`......__`	6	75
MIMAT0016806	cin-miR-4188-5p	3	`_......_`	8	75
MIMAT0016615	cin-miR-4063-3p	8	`__......`	3	75
MIMAT0015588	bmo-miR-3388-3p	7	`__......`	2	75
MIMAT0014926	mmu-miR-344b-3p	6	`......__`	1	75
MIMAT0014670	hma-miR-3003b-3p	2	`......__`	7	75
MIMAT0013193	eca-miR-105	3	`_......_`	8	75
MIMAT0013564	cte-miR-2701	8	`__......`	3	75
MIMAT0012593	aqc-miR530	7	`_......_`	2	75
MIMAT0013355	mtr-miR2592n	1	`_......_`	6	75
MIMAT0013354	mtr-miR2592m	1	`_......_`	6	75
MIMAT0013353	mtr-miR2592l	1	`_......_`	6	75
MIMAT0013352	mtr-miR2592k	1	`_......_`	6	75
MIMAT0013351	mtr-miR2592h	1	`_......_`	6	75
MIMAT0013350	mtr-miR2592g	1	`_......_`	6	75
MIMAT0013349	mtr-miR2592a.2-3p	1	`_......_`	6	75
MIMAT0013282	mtr-miR2593c	2	`......__`	7	75
MIMAT0013281	mtr-miR2593b	2	`......__`	7	75
MIMAT0013280	mtr-miR2593a	2	`......__`	7	75
MIMAT0013279	mtr-miR2592s-3p	1	`_......_`	6	75
MIMAT0013278	mtr-miR2592r	1	`_......_`	6	75
MIMAT0013277	mtr-miR2592q-3p	1	`_......_`	6	75
MIMAT0013276	mtr-miR2592p	1	`_......_`	6	75
MIMAT0013275	mtr-miR2592o-3p	1	`_......_`	6	75
MIMAT0013274	mtr-miR2592j	1	`_......_`	6	75
MIMAT0013273	mtr-miR2592i	1	`_......_`	6	75
MIMAT0013272	mtr-miR2592f	1	`_......_`	6	75
MIMAT0013271	mtr-miR2592e-3p	1	`_......_`	6	75
MIMAT0013270	mtr-miR2592d-3p	1	`_......_`	6	75
MIMAT0013269	mtr-miR2592c	1	`_......_`	6	75
MIMAT0013268	mtr-miR2592b-3p	1	`_......_`	6	75
MIMAT0012440	dsi-miR-1002-3p	6	`__......`	1	75
MIMAT0012390	dps-miR-2564-5p	2	`......__`	7	75
MIMAT0012327	dps-miR-2536-3p	1	`__......`	6	75
MIMAT0011279	sme-miR-2177-3p	1	`_......_`	6	75
MIMAT0012137	sme-miR-124d-5p	8	`......__`	3	75
MIMAT0010198	cfa-miR-105b	3	`_......_`	8	75
MIMAT0009879	cfa-miR-105a	3	`_......_`	8	75
MIMAT0009822	nve-miR-2049-5p	2	`_......_`	7	75
MIMAT0009217	bta-miR-105a	3	`_......_`	8	75
MIMAT0009216	bta-miR-105b	3	`_......_`	8	75
MIMAT0006399	mml-miR-523a	1	`__......`	6	75
MIMAT0020936	gma-miR1513a-3p	3	`......__`	8	75
MIMAT0005998	ptc-miR530b	7	`_......_`	2	75
MIMAT0005997	ptc-miR530a	7	`_......_`	2	75
MIMAT0004009	sme-miR-277b-3p	2	`_......_`	7	75
MIMAT0012090	sme-miR-1a-5p	7	`_......_`	2	75
MIMAT0003936	ath-miR777	8	`__......`	3	75
MIMAT0006787	osa-miR530-5p	7	`_......_`	2	75
MIMAT0002457	mne-miR-105	3	`_......_`	8	75
MIMAT0002456	lla-miR-105	3	`_......_`	8	75
MIMAT0002455	sla-miR-105	3	`_......_`	8	75
MIMAT0002454	mml-miR-105-5p	3	`_......_`	8	75
MIMAT0002453	ptr-miR-105	3	`_......_`	8	75
MIMAT0002452	ppa-miR-105	3	`_......_`	8	75
MIMAT0002451	ggo-miR-105	3	`_......_`	8	75
MIMAT0002450	ppy-miR-105	3	`_......_`	8	75
MIMAT0002117	ssc-miR-105-2	3	`_......_`	8	75
MIMAT0002116	ssc-miR-105-1	3	`_......_`	8	75
MIMAT0001479	ame-miR-263a	2	`......__`	7	75
MIMAT0001298	cbr-miR-357	2	`_......_`	7	75
MIMAT0000699	cel-miR-357-3p	1	`_......_`	6	75
MIMAT0000102	hsa-miR-105-5p	3	`_......_`	8	75