| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taacactt | 8 | ||
| MIMAT0003419 | ebv-miR-BART9-3p | 1 | ........ | 8 | 100 |
| MIMAT0037151 | ata-miR395b-3p | 7 | _....... | 1 | 87 |
| MIMAT0036807 | oha-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0036489 | tch-miR-141-3p | 1 | ......._ | 7 | 87 |
| MIMAT0036466 | tch-miR-200a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0036383 | gma-miR9746i | 8 | _....... | 2 | 87 |
| MIMAT0036373 | gma-miR9746h | 8 | _....... | 2 | 87 |
| MIMAT0036372 | gma-miR9746g | 8 | _....... | 2 | 87 |
| MIMAT0036371 | gma-miR9746f | 8 | _....... | 2 | 87 |
| MIMAT0036370 | gma-miR9746e | 8 | _....... | 2 | 87 |
| MIMAT0036369 | gma-miR9746d | 8 | _....... | 2 | 87 |
| MIMAT0036368 | gma-miR9746c | 8 | _....... | 2 | 87 |
| MIMAT0036367 | gma-miR9746b | 8 | _....... | 2 | 87 |
| MIMAT0036366 | gma-miR9746a | 8 | _....... | 2 | 87 |
| MIMAT0036045 | chi-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0035962 | chi-miR-141 | 1 | ......._ | 7 | 87 |
| MIMAT0035642 | dvi-miR-9549-5p | 8 | ......._ | 2 | 87 |
| MIMAT0035097 | efu-miR-141 | 1 | ......._ | 7 | 87 |
| MIMAT0035013 | efu-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0034735 | eca-miR-9158 | 8 | _....... | 2 | 87 |
| MIMAT0032480 | ssa-miR-200b-3p | 1 | ......._ | 7 | 87 |
| MIMAT0031610 | bbe-miR-200c-3p | 1 | ......._ | 7 | 87 |
| MIMAT0030733 | prd-miR-7937-3p | 1 | _....... | 7 | 87 |
| MIMAT0029453 | ipu-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0029418 | ipu-miR-141 | 1 | ......._ | 7 | 87 |
| MIMAT0029043 | gga-miR-7444-3p | 7 | ......._ | 1 | 87 |
| MIMAT0029026 | oan-miR-7436-5p | 7 | _....... | 1 | 87 |
| MIMAT0026258 | ccr-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0024300 | ggo-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0023769 | cgr-miR-141 | 1 | ......._ | 7 | 87 |
| MIMAT0022826 | sha-miR-141 | 1 | ......._ | 7 | 87 |
| MIMAT0022805 | sha-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0021845 | aca-miR-200a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0020723 | bdi-miR395d-3p | 7 | _....... | 1 | 87 |
| MIMAT0016737 | cin-miR-4139-3p | 8 | _....... | 2 | 87 |
| MIMAT0017895 | rno-miR-3592 | 7 | _....... | 1 | 87 |
| MIMAT0015796 | ppy-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0014545 | tgu-miR-200a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0012970 | eca-miR-141 | 1 | ......._ | 7 | 87 |
| MIMAT0012909 | eca-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0013259 | mtr-miR2588b | 1 | ......._ | 7 | 87 |
| MIMAT0013258 | mtr-miR2588a | 1 | ......._ | 7 | 87 |
| MIMAT0009493 | bfl-miR-200c | 1 | ......._ | 7 | 87 |
| MIMAT0009232 | bta-miR-141 | 1 | ......._ | 7 | 87 |
| MIMAT0008063 | ptr-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0008036 | ptr-miR-141 | 1 | ......._ | 7 | 87 |
| MIMAT0006233 | mml-miR-200a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0007378 | gma-miR1519 | 8 | _....... | 2 | 87 |
| MIMAT0006129 | csa-miR-141 | 1 | ......._ | 7 | 87 |
| MIMAT0006103 | cin-miR-141-3p | 1 | ......._ | 7 | 87 |
| MIMAT0006936 | oan-miR-200a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0004158 | mdo-miR-200a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0004151 | mdo-miR-141-3p | 1 | ......._ | 7 | 87 |
| MIMAT0012109 | sme-miR-87a-5p | 1 | _....... | 7 | 87 |
| MIMAT0003822 | bta-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0003693 | xtr-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0002982 | tni-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0002981 | fru-miR-200a | 1 | ......._ | 7 | 87 |
| MIMAT0001861 | dre-miR-200a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0001837 | dre-miR-141-3p | 1 | ......._ | 7 | 87 |
| MIMAT0001171 | gga-miR-200a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0000874 | rno-miR-200a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0000846 | rno-miR-141-3p | 1 | ......._ | 7 | 87 |
| MIMAT0000682 | hsa-miR-200a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0000519 | mmu-miR-200a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0000432 | hsa-miR-141-3p | 1 | ......._ | 7 | 87 |
| MIMAT0000153 | mmu-miR-141-3p | 1 | ......._ | 7 | 87 |
| MIMAT0031689 | bbe-miR-4866-5p | 1 | .c...... | 8 | 87 |
| MIMAT0020101 | bfl-miR-4866-5p | 1 | .c...... | 8 | 87 |
| MIMAT0019786 | hsa-miR-4694-5p | 8 | ......c. | 1 | 87 |
| MIMAT0017853 | rno-miR-3572 | 1 | .t...... | 8 | 87 |
| MIMAT0037226 | ata-miR2275c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0037211 | ata-miR395c-3p | 8 | __...... | 3 | 75 |
| MIMAT0037185 | ata-miR395f-3p | 8 | __...... | 3 | 75 |
| MIMAT0037165 | ata-miR395d-3p | 8 | __...... | 3 | 75 |
| MIMAT0037163 | ata-miR395a-3p | 8 | __...... | 3 | 75 |
| MIMAT0037117 | ata-miR395e-3p | 8 | __...... | 3 | 75 |
| MIMAT0037110 | ata-miR2275a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036470 | tch-miR-142 | 8 | _......_ | 3 | 75 |
| MIMAT0036269 | chi-miR-505-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035541 | bdi-miR5181e | 3 | __...... | 8 | 75 |
| MIMAT0035520 | bdi-miR395q | 8 | __...... | 3 | 75 |
| MIMAT0035427 | nve-miR-9468 | 7 | __...... | 2 | 75 |
| MIMAT0035357 | gsa-miR-9404-3p | 7 | ......__ | 2 | 75 |
| MIMAT0034942 | efu-miR-9287 | 1 | __...... | 6 | 75 |
| MIMAT0034544 | eca-miR-9004 | 8 | _......_ | 3 | 75 |
| MIMAT0033525 | sma-miR-8410-3p | 6 | _......_ | 1 | 75 |
| MIMAT0033115 | ppc-miR-8299-5p | 7 | _......_ | 2 | 75 |
| MIMAT0032865 | ppc-miR-8217-3p | 7 | __...... | 2 | 75 |
| MIMAT0032800 | cel-miR-8193-3p | 3 | __...... | 8 | 75 |
| MIMAT0032362 | ssa-miR-142a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0031821 | cpa-miR395e | 8 | __...... | 3 | 75 |
| MIMAT0031820 | cpa-miR395d | 8 | __...... | 3 | 75 |
| MIMAT0031819 | cpa-miR395c | 8 | __...... | 3 | 75 |
| MIMAT0031818 | cpa-miR395b | 8 | __...... | 3 | 75 |
| MIMAT0031817 | cpa-miR395a | 8 | __...... | 3 | 75 |
| MIMAT0031577 | bbe-miR-124-5p | 6 | _......_ | 1 | 75 |
| MIMAT0031553 | ppe-miR6274b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0030572 | prd-miR-5358b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030522 | prd-miR-7882-5p | 3 | __...... | 8 | 75 |
| MIMAT0030096 | bdi-miR395p-3p | 8 | __...... | 3 | 75 |
| MIMAT0030094 | bdi-miR395o-3p | 8 | __...... | 3 | 75 |
| MIMAT0030042 | oar-miR-200a | 1 | _......_ | 6 | 75 |
| MIMAT0029419 | ipu-miR-142 | 8 | _......_ | 3 | 75 |
| MIMAT0028750 | mdo-miR-1545b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0031066 | mdo-miR-199b-3-5p | 8 | _......_ | 3 | 75 |
| MIMAT0031065 | mdo-miR-199b-2-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028425 | mmu-miR-7228-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028406 | mmu-miR-7219-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028393 | mmu-miR-7212-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028271 | mml-miR-7168-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026452 | sbi-miR6234b-5p | 6 | __...... | 1 | 75 |
| MIMAT0026450 | sbi-miR6234a-5p | 6 | __...... | 1 | 75 |
| MIMAT0026223 | ccr-miR-142-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027931 | mmu-miR-7013-3p | 3 | __...... | 8 | 75 |
| MIMAT0027415 | hsa-miR-6757-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025614 | gga-miR-6553-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025483 | hsa-miR-6513-3p | 8 | __...... | 3 | 75 |
| MIMAT0025455 | hsa-miR-6500-3p | 1 | __...... | 6 | 75 |
| MIMAT0025103 | mmu-miR-6360 | 7 | _......_ | 2 | 75 |
| MIMAT0024738 | nta-miR6148b | 7 | ......__ | 2 | 75 |
| MIMAT0023771 | cgr-miR-142-3p | 8 | _......_ | 3 | 75 |
| MIMAT0023497 | hco-miR-5985 | 2 | _......_ | 7 | 75 |
| MIMAT0023462 | hco-miR-5886b | 2 | _......_ | 7 | 75 |
| MIMAT0023246 | gma-miR395g | 8 | __...... | 3 | 75 |
| MIMAT0023245 | gma-miR395f | 8 | __...... | 3 | 75 |
| MIMAT0023244 | gma-miR395e | 8 | __...... | 3 | 75 |
| MIMAT0023243 | gma-miR395d | 8 | __...... | 3 | 75 |
| MIMAT0023191 | gma-miR5785 | 7 | _......_ | 2 | 75 |
| MIMAT0022571 | ola-miR-200a | 1 | _......_ | 6 | 75 |
| MIMAT0021685 | sbi-miR5387a | 1 | ......__ | 6 | 75 |
| MIMAT0020752 | bdi-miR395n-3p | 8 | __...... | 3 | 75 |
| MIMAT0020751 | bdi-miR395l-3p | 8 | __...... | 3 | 75 |
| MIMAT0020750 | bdi-miR395k-3p | 8 | __...... | 3 | 75 |
| MIMAT0020749 | bdi-miR395j-3p | 8 | __...... | 3 | 75 |
| MIMAT0020748 | bdi-miR395h-3p | 8 | __...... | 3 | 75 |
| MIMAT0020747 | bdi-miR395g-3p | 8 | __...... | 3 | 75 |
| MIMAT0020746 | bdi-miR395f-3p | 8 | __...... | 3 | 75 |
| MIMAT0020745 | bdi-miR395e-3p | 8 | __...... | 3 | 75 |
| MIMAT0020744 | bdi-miR395m | 8 | __...... | 3 | 75 |
| MIMAT0020729 | bdi-miR5180a | 7 | __...... | 2 | 75 |
| MIMAT0020713 | bdi-miR5180b | 7 | __...... | 2 | 75 |
| MIMAT0020702 | bdi-miR395c-3p | 8 | __...... | 3 | 75 |
| MIMAT0020663 | bdi-miR395b | 8 | __...... | 3 | 75 |
| MIMAT0020656 | bdi-miR395a | 8 | __...... | 3 | 75 |
| MIMAT0020636 | mmu-miR-3572-3p | 2 | __...... | 7 | 75 |
| MIMAT0020573 | bdi-miR5066 | 6 | __...... | 1 | 75 |
| MIMAT0021047 | ath-miR5014a-5p | 1 | __...... | 6 | 75 |
| MIMAT0020035 | sko-miR-4827b | 6 | __...... | 1 | 75 |
| MIMAT0019997 | cel-miR-4811-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019628 | pma-miR-4595 | 7 | _......_ | 2 | 75 |
| MIMAT0018223 | tae-miR395b | 8 | __...... | 3 | 75 |
| MIMAT0018885 | tca-miR-3892-3p | 6 | __...... | 1 | 75 |
| MIMAT0018739 | tca-miR-3845-3p | 8 | __...... | 3 | 75 |
| MIMAT0018080 | hsa-miR-3659 | 8 | _......_ | 3 | 75 |
| MIMAT0016885 | hsa-miR-4255 | 7 | _......_ | 2 | 75 |
| MIMAT0016611 | cin-miR-4061-3p | 1 | _......_ | 6 | 75 |
| MIMAT0017883 | rno-miR-3587 | 1 | _......_ | 6 | 75 |
| MIMAT0017847 | rno-miR-216b-3p | 2 | __...... | 7 | 75 |
| MIMAT0016082 | ppy-miR-648 | 6 | __...... | 1 | 75 |
| MIMAT0016050 | ppy-miR-609 | 8 | _......_ | 3 | 75 |
| MIMAT0016037 | ppy-miR-595 | 7 | __...... | 2 | 75 |
| MIMAT0017570 | aly-miR398c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015025 | hsa-miR-3152-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026999 | tgu-miR-142-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017389 | tgu-miR-338-5p | 1 | _......_ | 6 | 75 |
| MIMAT0013961 | ssc-miR-505 | 3 | _......_ | 8 | 75 |
| MIMAT0012780 | mml-miR-595 | 7 | __...... | 2 | 75 |
| MIMAT0012501 | dsi-miR-975 | 3 | _......_ | 8 | 75 |
| MIMAT0012066 | bta-miR-2475 | 8 | __...... | 3 | 75 |
| MIMAT0011977 | bta-miR-2414 | 7 | ......__ | 2 | 75 |
| MIMAT0011429 | cel-miR-2208b-5p | 6 | __...... | 1 | 75 |
| MIMAT0011427 | cel-miR-2208a-5p | 6 | __...... | 1 | 75 |
| MIMAT0011264 | sme-miR-2167 | 7 | ......__ | 2 | 75 |
| MIMAT0009978 | hsa-miR-2053 | 6 | ......__ | 1 | 75 |
| MIMAT0009876 | cfa-miR-141 | 1 | _......_ | 6 | 75 |
| MIMAT0009775 | nve-miR-2024g-3p | 1 | ......__ | 6 | 75 |
| MIMAT0009624 | sko-miR-124-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019146 | bfl-miR-124-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019123 | tca-miR-275-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019114 | tca-miR-124-5p | 6 | _......_ | 1 | 75 |
| MIMAT0008265 | ptr-miR-595 | 7 | __...... | 2 | 75 |
| MIMAT0006486 | mml-miR-648 | 6 | __...... | 1 | 75 |
| MIMAT0026760 | oan-miR-1398-3p | 6 | _......_ | 1 | 75 |
| MIMAT0005855 | mmu-miR-467h | 8 | __...... | 3 | 75 |
| MIMAT0005293 | mmu-miR-467e-5p | 8 | __...... | 3 | 75 |
| MIMAT0004477 | mdv2-miR-M30-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020356 | cel-miR-1020-5p | 8 | __...... | 3 | 75 |
| MIMAT0020904 | dme-miR-1007-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005491 | dme-miR-975-5p | 3 | _......_ | 8 | 75 |
| MIMAT0026721 | hsa-miR-216b-3p | 3 | __...... | 8 | 75 |
| MIMAT0003791 | bta-miR-142-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017237 | mmu-miR-668-5p | 8 | __...... | 3 | 75 |
| MIMAT0017233 | mmu-miR-216b-3p | 1 | __...... | 6 | 75 |
| MIMAT0003318 | hsa-miR-648 | 6 | __...... | 1 | 75 |
| MIMAT0003263 | hsa-miR-595 | 7 | __...... | 2 | 75 |
| MIMAT0002201 | ppa-miR-141 | 1 | _......_ | 6 | 75 |
| MIMAT0002200 | ppy-miR-141 | 1 | _......_ | 6 | 75 |
| MIMAT0002198 | ggo-miR-141 | 1 | _......_ | 6 | 75 |
| MIMAT0002196 | mml-miR-141-3p | 1 | _......_ | 6 | 75 |
| MIMAT0002179 | kshv-miR-K12-10a-3p | 7 | _......_ | 2 | 75 |
