| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taacctga | 8 | ||
| MIMAT0003427 | rlcv-miR-rL1-1-5p | 1 | ........ | 8 | 100 |
| MIMAT0000995 | ebv-miR-BHRF1-1 | 1 | ........ | 8 | 100 |
| MIMAT0031853 | cpa-miR8155 | 1 | ......._ | 7 | 87 |
| MIMAT0031580 | bbe-miR-125a-3p | 8 | ......._ | 2 | 87 |
| MIMAT0028668 | mdo-miR-7331-5p | 1 | _....... | 7 | 87 |
| MIMAT0028405 | mmu-miR-7218-3p | 2 | ......._ | 8 | 87 |
| MIMAT0028363 | mml-miR-7199-3p | 8 | _....... | 2 | 87 |
| MIMAT0024582 | bta-miR-2285g | 2 | _....... | 8 | 87 |
| MIMAT0024580 | bta-miR-2285e | 2 | _....... | 8 | 87 |
| MIMAT0023985 | cgr-miR-582 | 1 | ......._ | 7 | 87 |
| MIMAT0021542 | asu-miR-100e-5p | 1 | _....... | 7 | 87 |
| MIMAT0015586 | bmo-miR-3387-3p | 8 | _....... | 2 | 87 |
| MIMAT0011950 | bta-miR-2285c | 2 | _....... | 8 | 87 |
| MIMAT0011815 | bta-miR-2285d | 2 | _....... | 8 | 87 |
| MIMAT0019166 | spu-miR-2003-3p | 7 | ......._ | 1 | 87 |
| MIMAT0019147 | bfl-miR-125a-3p | 8 | ......._ | 2 | 87 |
| MIMAT0007432 | gga-miR-1572 | 2 | _....... | 8 | 87 |
| MIMAT0007311 | oan-miR-1421al-5p | 7 | ......._ | 1 | 87 |
| MIMAT0006963 | oan-miR-1421a-5p | 7 | ......._ | 1 | 87 |
| MIMAT0005292 | mmu-miR-582-3p | 1 | ......._ | 7 | 87 |
| MIMAT0031965 | dre-miR-125b-3-3p | 8 | ......._ | 2 | 87 |
| MIMAT0037056 | ssc-miR-9838-5p | 8 | .c...... | 1 | 87 |
| MIMAT0033527 | sma-miR-8411-3p | 1 | ......t. | 8 | 87 |
| MIMAT0032758 | ssa-miR-8163-3p | 8 | .g...... | 1 | 87 |
| MIMAT0023321 | hco-miR-5887 | 1 | .t...... | 8 | 87 |
| MIMAT0018006 | hsa-miR-3622b-3p | 1 | .c...... | 8 | 87 |
| MIMAT0018004 | hsa-miR-3622a-3p | 1 | .c...... | 8 | 87 |
| MIMAT0011852 | bta-miR-2323 | 1 | .g...... | 8 | 87 |
| MIMAT0009808 | nve-miR-2040b-5p | 8 | .g...... | 1 | 87 |
| MIMAT0036937 | oha-miR-490-3p | 2 | _......_ | 7 | 75 |
| MIMAT0036250 | chi-miR-490 | 2 | _......_ | 7 | 75 |
| MIMAT0036248 | chi-miR-487b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036209 | chi-miR-409-5p | 6 | ......__ | 1 | 75 |
| MIMAT0036080 | chi-miR-2284d | 3 | _......_ | 8 | 75 |
| MIMAT0035984 | chi-miR-154a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0034870 | efu-miR-9252 | 6 | _......_ | 1 | 75 |
| MIMAT0034554 | eca-miR-9013 | 6 | _......_ | 1 | 75 |
| MIMAT0032934 | ppc-miR-8239-5p | 2 | __...... | 7 | 75 |
| MIMAT0032631 | ssa-miR-430a-5p | 2 | __...... | 7 | 75 |
| MIMAT0031847 | cpa-miR8150 | 3 | _......_ | 8 | 75 |
| MIMAT0030818 | prd-miR-76-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030440 | bta-miR-2285ac | 3 | _......_ | 8 | 75 |
| MIMAT0030436 | bta-miR-2285ab | 3 | _......_ | 8 | 75 |
| MIMAT0030274 | bdi-miR7764-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030203 | bdi-miR7734-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028937 | mdo-miR-7398i-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028929 | mdo-miR-7398j-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027725 | mmu-miR-6912-3p | 3 | __...... | 8 | 75 |
| MIMAT0025775 | gga-miR-6673-3p | 1 | __...... | 6 | 75 |
| MIMAT0025751 | gga-miR-6651-5p | 8 | _......_ | 3 | 75 |
| MIMAT0025376 | ssc-miR-490 | 2 | _......_ | 7 | 75 |
| MIMAT0024975 | hme-miR-306 | 6 | __...... | 1 | 75 |
| MIMAT0024581 | bta-miR-2285f | 3 | _......_ | 8 | 75 |
| MIMAT0024486 | mse-miR-306 | 6 | __...... | 1 | 75 |
| MIMAT0024430 | mse-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0024375 | ppy-miR-3934 | 6 | __...... | 1 | 75 |
| MIMAT0024205 | ggo-miR-490 | 2 | _......_ | 7 | 75 |
| MIMAT0024170 | ggo-miR-409 | 6 | ......__ | 1 | 75 |
| MIMAT0024005 | cgr-miR-872-5p | 7 | ......__ | 2 | 75 |
| MIMAT0023950 | cgr-miR-409-5p | 6 | ......__ | 1 | 75 |
| MIMAT0023786 | cgr-miR-154-5p | 7 | ......__ | 2 | 75 |
| MIMAT0023283 | osa-miR5811 | 3 | ......__ | 8 | 75 |
| MIMAT0022107 | pti-miR5474 | 1 | _......_ | 6 | 75 |
| MIMAT0021977 | aca-miR-490-3p | 2 | _......_ | 7 | 75 |
| MIMAT0021889 | aca-miR-221-5p | 1 | _......_ | 6 | 75 |
| MIMAT0021560 | asu-miR-5351-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027073 | bdi-miR169c-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020650 | rgl-miR5139 | 2 | _......_ | 7 | 75 |
| MIMAT0020626 | mmu-miR-5118 | 7 | ......__ | 2 | 75 |
| MIMAT0022985 | mmu-miR-5107-3p | 2 | _......_ | 7 | 75 |
| MIMAT0020580 | bdi-miR5069 | 7 | ......__ | 2 | 75 |
| MIMAT0020054 | sko-miR-4836-3p | 7 | __...... | 2 | 75 |
| MIMAT0019327 | oar-miR-409-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019315 | oar-miR-154a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019300 | oar-miR-655-5p | 8 | ......__ | 3 | 75 |
| MIMAT0019267 | oar-miR-494-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018429 | nlo-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0018386 | ngi-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0018349 | hsa-miR-3934-5p | 6 | __...... | 1 | 75 |
| MIMAT0018579 | ame-miR-306 | 6 | __...... | 1 | 75 |
| MIMAT0018053 | vvi-miR3640-5p | 1 | __...... | 6 | 75 |
| MIMAT0022960 | ssc-miR-490-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016650 | cin-miR-4080-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016218 | ppy-miR-1297 | 7 | __...... | 2 | 75 |
| MIMAT0016073 | ppy-miR-634 | 1 | _......_ | 6 | 75 |
| MIMAT0015910 | ppy-miR-490-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015875 | ppy-miR-409-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015685 | nvi-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0019204 | hsa-miR-3140-5p | 1 | __...... | 6 | 75 |
| MIMAT0015004 | hsa-miR-544b | 1 | __...... | 6 | 75 |
| MIMAT0014938 | mmu-miR-3103-3p | 1 | ......__ | 6 | 75 |
| MIMAT0014776 | api-miR-306 | 6 | __...... | 1 | 75 |
| MIMAT0014721 | api-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0014548 | tgu-miR-490-3p | 2 | _......_ | 7 | 75 |
| MIMAT0014482 | tgu-miR-2972 | 6 | __...... | 1 | 75 |
| MIMAT0014438 | cqu-miR-306 | 6 | __...... | 1 | 75 |
| MIMAT0014364 | cqu-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0014229 | aae-miR-306-5p | 6 | __...... | 1 | 75 |
| MIMAT0014209 | aae-miR-275-3p | 6 | __...... | 1 | 75 |
| MIMAT0013151 | eca-miR-409-5p | 6 | ......__ | 1 | 75 |
| MIMAT0013129 | eca-miR-154a | 7 | ......__ | 2 | 75 |
| MIMAT0013119 | eca-miR-872 | 7 | ......__ | 2 | 75 |
| MIMAT0012945 | eca-miR-490-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017360 | rno-miR-582-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012823 | rno-miR-490-3p | 2 | _......_ | 7 | 75 |
| MIMAT0012717 | hvt-miR-H5-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013682 | bmo-miR-2786 | 6 | ......__ | 1 | 75 |
| MIMAT0012693 | isc-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0012651 | dpu-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0012629 | bmo-miR-306a-5p | 6 | __...... | 1 | 75 |
| MIMAT0013566 | cte-miR-2702-3p | 8 | __...... | 3 | 75 |
| MIMAT0012413 | dps-miR-2571-3p | 7 | ......__ | 2 | 75 |
| MIMAT0012402 | dps-miR-2567b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0012396 | dps-miR-2567a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0011828 | bta-miR-2312 | 3 | _......_ | 8 | 75 |
| MIMAT0011683 | ppc-miR-2236a | 2 | __...... | 7 | 75 |
| MIMAT0011469 | cbr-miR-35d-5p | 8 | _......_ | 3 | 75 |
| MIMAT0011438 | cel-miR-2211-3p | 6 | __...... | 1 | 75 |
| MIMAT0009940 | cfa-miR-872 | 7 | ......__ | 2 | 75 |
| MIMAT0009875 | cfa-miR-490 | 2 | _......_ | 7 | 75 |
| MIMAT0009821 | nve-miR-2048-3p | 3 | __...... | 8 | 75 |
| MIMAT0019161 | spu-miR-125-3p | 7 | _......_ | 2 | 75 |
| MIMAT0009331 | bta-miR-490 | 2 | _......_ | 7 | 75 |
| MIMAT0009310 | bta-miR-409a | 6 | ......__ | 1 | 75 |
| MIMAT0009240 | bta-miR-154a | 7 | ......__ | 2 | 75 |
| MIMAT0009115 | dya-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0009068 | dya-miR-306-5p | 6 | __...... | 1 | 75 |
| MIMAT0009045 | dwi-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0008986 | dwi-miR-306 | 6 | __...... | 1 | 75 |
| MIMAT0008970 | dvi-miR-275-3p | 6 | __...... | 1 | 75 |
| MIMAT0008913 | dvi-miR-306-5p | 6 | __...... | 1 | 75 |
| MIMAT0008880 | dsi-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0008820 | dse-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0008804 | dse-miR-306-5p | 6 | __...... | 1 | 75 |
| MIMAT0008759 | dpe-miR-306 | 6 | __...... | 1 | 75 |
| MIMAT0008744 | dpe-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0008664 | dmo-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0008648 | dmo-miR-306-5p | 6 | __...... | 1 | 75 |
| MIMAT0008625 | dgr-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0008592 | dgr-miR-306 | 6 | __...... | 1 | 75 |
| MIMAT0008503 | der-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0008494 | der-miR-306-5p | 6 | __...... | 1 | 75 |
| MIMAT0008451 | dan-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0008450 | dan-miR-306 | 6 | __...... | 1 | 75 |
| MIMAT0008379 | tca-miR-275-3p | 6 | __...... | 1 | 75 |
| MIMAT0008306 | ptr-miR-657 | 8 | _......_ | 3 | 75 |
| MIMAT0008300 | ptr-miR-649 | 2 | _......_ | 7 | 75 |
| MIMAT0008165 | ptr-miR-490 | 2 | _......_ | 7 | 75 |
| MIMAT0006487 | mml-miR-649 | 2 | _......_ | 7 | 75 |
| MIMAT0006351 | mml-miR-490-3p | 2 | _......_ | 7 | 75 |
| MIMAT0006314 | mml-miR-409-5p | 6 | ......__ | 1 | 75 |
| MIMAT0006215 | mml-miR-154-5p | 7 | ......__ | 2 | 75 |
| MIMAT0007264 | oan-miR-1421af-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007261 | oan-miR-1421ae | 8 | _......_ | 3 | 75 |
| MIMAT0007259 | oan-miR-1421ad-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007236 | oan-miR-1421v-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007086 | oan-miR-1421t-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007082 | oan-miR-1421r-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007066 | oan-miR-1421k-5p | 8 | _......_ | 3 | 75 |
| MIMAT0006967 | oan-miR-1421c-5p | 7 | ......__ | 2 | 75 |
| MIMAT0006811 | oan-miR-490-3p | 2 | _......_ | 7 | 75 |
| MIMAT0005530 | aga-miR-306 | 6 | __...... | 1 | 75 |
| MIMAT0005408 | cre-miR1157-3p | 7 | __...... | 2 | 75 |
| MIMAT0005282 | rno-miR-872-5p | 7 | ......__ | 2 | 75 |
| MIMAT0005011 | pta-miR950b | 6 | __...... | 1 | 75 |
| MIMAT0005010 | pta-miR950a | 6 | __...... | 1 | 75 |
| MIMAT0004424 | ame-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0004385 | cre-miR918 | 2 | __...... | 7 | 75 |
| MIMAT0004934 | mmu-miR-872-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004311 | ath-miR864-5p | 6 | __...... | 1 | 75 |
| MIMAT0003780 | mmu-miR-490-3p | 2 | _......_ | 7 | 75 |
| MIMAT0004201 | bmo-miR-275-3p | 6 | __...... | 1 | 75 |
| MIMAT0003412 | ebv-miR-BART4-5p | 2 | __...... | 7 | 75 |
| MIMAT0003366 | gga-miR-490-3p | 2 | _......_ | 7 | 75 |
| MIMAT0003335 | hsa-miR-657 | 8 | _......_ | 3 | 75 |
| MIMAT0026626 | hsa-miR-655-5p | 8 | ......__ | 3 | 75 |
| MIMAT0003319 | hsa-miR-649 | 2 | _......_ | 7 | 75 |
| MIMAT0003204 | rno-miR-409a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0002806 | hsa-miR-490-3p | 2 | _......_ | 7 | 75 |
| MIMAT0002300 | ppa-miR-154 | 7 | ......__ | 2 | 75 |
| MIMAT0002299 | mne-miR-154 | 7 | ......__ | 2 | 75 |
| MIMAT0002298 | ppy-miR-154 | 7 | ......__ | 2 | 75 |
| MIMAT0002297 | ggo-miR-154 | 7 | ......__ | 2 | 75 |
| MIMAT0002296 | ptr-miR-154 | 7 | ......__ | 2 | 75 |
| MIMAT0022898 | ptc-miR169b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0001638 | hsa-miR-409-5p | 6 | ......__ | 1 | 75 |
| MIMAT0001508 | aga-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0001256 | dps-miR-306 | 6 | __...... | 1 | 75 |
| MIMAT0001238 | dps-miR-275 | 6 | __...... | 1 | 75 |
| MIMAT0026494 | gga-miR-221-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004746 | mmu-miR-409-5p | 6 | ......__ | 1 | 75 |
| MIMAT0000856 | rno-miR-154-5p | 7 | ......__ | 2 | 75 |
| MIMAT0000452 | hsa-miR-154-5p | 7 | ......__ | 2 | 75 |
| MIMAT0000393 | dme-miR-306-5p | 6 | __...... | 1 | 75 |
| MIMAT0000333 | dme-miR-275-3p | 6 | __...... | 1 | 75 |
| MIMAT0000164 | mmu-miR-154-5p | 7 | ......__ | 2 | 75 |
