| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taacgctg | 8 | ||
| MIMAT0025863 | blv-miR-B3-3p | 1 | ........ | 8 | 100 |
| MIMAT0033597 | sma-miR-8444-3p | 2 | _....... | 8 | 87 |
| MIMAT0030960 | stu-miR7122-3p | 8 | _....... | 2 | 87 |
| MIMAT0030844 | prd-miR-7971-5p | 7 | ......._ | 1 | 87 |
| MIMAT0028736 | mdo-miR-7362-5p | 8 | _....... | 2 | 87 |
| MIMAT0018589 | ame-miR-3723 | 8 | _....... | 2 | 87 |
| MIMAT0017564 | aly-miR397b-3p | 8 | _....... | 2 | 87 |
| MIMAT0029966 | mtr-miR2653d | 1 | .c...... | 8 | 87 |
| MIMAT0013438 | mtr-miR2653c | 1 | .c...... | 8 | 87 |
| MIMAT0013437 | mtr-miR2653b | 1 | .c...... | 8 | 87 |
| MIMAT0013436 | mtr-miR2653a | 1 | .c...... | 8 | 87 |
| MIMAT0012421 | dps-miR-2575-3p | 8 | .g...... | 1 | 87 |
| MIMAT0020349 | cel-miR-790-3p | 8 | ......c. | 1 | 87 |
| MIMAT0036791 | oha-miR-199b-5p | 8 | __...... | 3 | 75 |
| MIMAT0035278 | gsa-miR-10a-5p | 2 | __...... | 7 | 75 |
| MIMAT0034721 | eca-miR-9145 | 8 | _......_ | 3 | 75 |
| MIMAT0033811 | pxy-miR-8544-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033400 | str-miR-8377-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032627 | ssa-miR-375-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0028187 | dev-miR-D14-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025094 | mmu-miR-6351 | 7 | _......_ | 2 | 75 |
| MIMAT0024860 | mmu-miR-6239 | 7 | _......_ | 2 | 75 |
| MIMAT0024387 | ppy-miR-3912 | 1 | ......__ | 6 | 75 |
| MIMAT0018186 | hsa-miR-3912-3p | 1 | ......__ | 6 | 75 |
| MIMAT0018809 | tca-miR-3863-3p | 7 | __...... | 2 | 75 |
| MIMAT0018767 | tca-miR-3855-3p | 1 | ......__ | 6 | 75 |
| MIMAT0018729 | tca-miR-3842-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016623 | cin-miR-4067-3p | 6 | _......_ | 1 | 75 |
| MIMAT0014697 | hsv2-miR-H11-5p | 7 | _......_ | 2 | 75 |
| MIMAT0014143 | ath-miR2939 | 1 | ......__ | 6 | 75 |
| MIMAT0017387 | csi-miR172a-5p | 7 | __...... | 2 | 75 |
| MIMAT0012731 | iltv-miR-I6-3p | 1 | __...... | 6 | 75 |
| MIMAT0007549 | gga-miR-1666 | 1 | ......__ | 6 | 75 |
| MIMAT0004393 | cre-miR910 | 8 | __...... | 3 | 75 |
| MIMAT0001005 | ath-miR404 | 3 | ......__ | 8 | 75 |
