| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taacggga | 8 | ||
| MIMAT0000998 | ebv-miR-BHRF1-3 | 1 | ........ | 8 | 100 |
| MIMAT0035220 | dme-miR-9378-3p | 2 | _....... | 8 | 87 |
| MIMAT0019766 | hsa-miR-4681 | 1 | _....... | 7 | 87 |
| MIMAT0032655 | ssa-miR-462b-5p | 1 | ......a. | 8 | 87 |
| MIMAT0032653 | ssa-miR-462a-5p | 1 | ......a. | 8 | 87 |
| MIMAT0029519 | ipu-miR-462 | 1 | ......a. | 8 | 87 |
| MIMAT0001855 | dre-miR-462 | 1 | ......a. | 8 | 87 |
| MIMAT0037001 | ssc-miR-9784-5p | 1 | _......_ | 6 | 75 |
| MIMAT0035664 | bra-miR9555a-3p | 8 | __...... | 3 | 75 |
| MIMAT0035576 | dvi-miR-956-5p | 1 | ......__ | 6 | 75 |
| MIMAT0034466 | eca-miR-8937 | 6 | __...... | 1 | 75 |
| MIMAT0034193 | gra-miR7502e | 2 | ......__ | 7 | 75 |
| MIMAT0033696 | pxy-miR-8489a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030698 | prd-miR-7925-5p | 1 | __...... | 6 | 75 |
| MIMAT0030545 | prd-miR-7887-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030273 | bdi-miR7763-3p | 8 | __...... | 3 | 75 |
| MIMAT0030166 | bdi-miR7721-5p | 1 | __...... | 6 | 75 |
| MIMAT0029602 | cbr-miR-7595 | 8 | _......_ | 3 | 75 |
| MIMAT0029055 | gga-miR-7450-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025590 | gga-miR-6542-3p | 1 | __...... | 6 | 75 |
| MIMAT0022561 | ola-miR-462 | 2 | ......__ | 7 | 75 |
| MIMAT0019648 | pma-miR-4614 | 1 | __...... | 6 | 75 |
| MIMAT0019526 | pma-miR-216a-3p | 1 | __...... | 6 | 75 |
| MIMAT0019019 | hsa-miR-4485-3p | 1 | ......__ | 6 | 75 |
| MIMAT0018174 | mghv-miR-M1-14-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017928 | aly-miR4239 | 7 | ......__ | 2 | 75 |
| MIMAT0016724 | cin-miR-4129-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016527 | cin-miR-4019-3p | 6 | _......_ | 1 | 75 |
| MIMAT0013841 | bta-miR-2883 | 8 | __...... | 3 | 75 |
| MIMAT0012711 | hvt-miR-H2 | 6 | _......_ | 1 | 75 |
| MIMAT0013627 | bmo-miR-2757-5p | 1 | __...... | 6 | 75 |
| MIMAT0012328 | dps-miR-2537-5p | 1 | ......__ | 6 | 75 |
| MIMAT0011702 | ppc-miR-2237a | 8 | _......_ | 3 | 75 |
| MIMAT0010060 | osa-miR2098-5p | 6 | __...... | 1 | 75 |
| MIMAT0006421 | mml-miR-552 | 1 | _......_ | 6 | 75 |
| MIMAT0007121 | oan-miR-1381-3p | 3 | __...... | 8 | 75 |
| MIMAT0005200 | ppt-miR1071-3p | 7 | _......_ | 2 | 75 |
