VIRmiRNA | Resource for experimental viral miRNA and their targets

Result for your query miRNA sequence
>rcmv-miR-r1-1
uaagaug

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	miRNA	Start	Alignment	End	% Identity
Query		1	`taagatg`	7
MIMAT0037205	ata-miR9674a-3p	2	`.......`	8	100
MIMAT0033857	atr-miR8574	8	`.......`	2	100
MIMAT0033686	sma-miR-8482-3p	1	`.......`	7	100
MIMAT0032479	ssa-miR-200b-5p	7	`.......`	1	100
MIMAT0032478	ssa-miR-200a-3-5p	7	`.......`	1	100
MIMAT0032477	ssa-miR-200a-2-5p	7	`.......`	1	100
MIMAT0032475	ssa-miR-200a-1-5p	7	`.......`	1	100
MIMAT0030556	prd-miR-7940b-5p	2	`.......`	8	100
MIMAT0028577	mdo-miR-7296-3p	1	`.......`	7	100
MIMAT0025045	sma-miR-8-5p	7	`.......`	1	100
MIMAT0021846	aca-miR-200b-5p	7	`.......`	1	100
MIMAT0021844	aca-miR-200a-5p	7	`.......`	1	100
MIMAT0019509	pma-miR-200b-5p	7	`.......`	1	100
MIMAT0016251	sja-miR-8-5p	7	`.......`	1	100
MIMAT0017630	aly-miR844-3p	8	`.......`	2	100
MIMAT0014640	tgu-miR-200a-5p	7	`.......`	1	100
MIMAT0014408	cqu-miR-8-5p	7	`.......`	1	100
MIMAT0014214	aae-miR-8-5p	7	`.......`	1	100
MIMAT0010148	lmi-miR-8-5p	7	`.......`	1	100
MIMAT0009865	cfa-miR-200a	7	`.......`	1	100
MIMAT0009864	cfa-miR-200b	7	`.......`	1	100
MIMAT0009406	mmu-miR-1941-3p	7	`.......`	1	100
MIMAT0032077	dvi-miR-8-5p	7	`.......`	1	100
MIMAT0019100	tca-miR-8-5p	7	`.......`	1	100
MIMAT0026842	mml-miR-200a-5p	7	`.......`	1	100
MIMAT0006937	oan-miR-200b-5p	7	`.......`	1	100
MIMAT0006935	oan-miR-200a-5p	7	`.......`	1	100
MIMAT0004157	mdo-miR-200a-5p	7	`.......`	1	100
MIMAT0026694	mdo-miR-200c-5p	7	`.......`	1	100
MIMAT0015224	bmo-miR-8-5p	7	`.......`	1	100
MIMAT0031986	dre-miR-200c-5p	7	`.......`	1	100
MIMAT0031985	dre-miR-200b-5p	7	`.......`	1	100
MIMAT0031984	dre-miR-200a-5p	7	`.......`	1	100
MIMAT0031974	dre-miR-141-5p	7	`.......`	1	100
MIMAT0026533	gga-miR-200a-5p	7	`.......`	1	100
MIMAT0017152	rno-miR-200b-5p	7	`.......`	1	100
MIMAT0017151	rno-miR-200a-5p	7	`.......`	1	100
MIMAT0001620	hsa-miR-200a-5p	7	`.......`	1	100
MIMAT0004619	mmu-miR-200a-5p	7	`.......`	1	100
MIMAT0004571	hsa-miR-200b-5p	7	`.......`	1	100
MIMAT0004545	mmu-miR-200b-5p	7	`.......`	1	100
MIMAT0020791	dme-miR-8-5p	7	`.......`	1	100
MIMAT0035648	dvi-miR-975-3p	3	`_......`	8	85
MIMAT0033900	atr-miR8609	3	`......_`	8	85
MIMAT0033843	atr-miR8567	3	`_......`	8	85
MIMAT0033764	pxy-miR-8523	3	`_......`	8	85
MIMAT0032389	ssa-miR-153a-2-5p	7	`_......`	2	85
MIMAT0031831	cpa-miR8138	3	`_......`	8	85
MIMAT0031708	bbe-miR-4891-5p	1	`_......`	6	85
MIMAT0031606	bbe-miR-200a-3p	6	`......_`	1	85
MIMAT0031288	stu-miR172c-5p	8	`_......`	3	85
MIMAT0030945	stu-miR8035	8	`_......`	3	85
MIMAT0030746	prd-miR-7943-5p	6	`......_`	1	85
MIMAT0030455	prd-miR-100-3p	8	`_......`	3	85
MIMAT0028632	mdo-miR-7316-5p	2	`_......`	7	85
MIMAT0028510	mdo-miR-7270-5p	1	`......_`	6	85
MIMAT0028041	mmu-miR-6769b-3p	6	`_......`	1	85
MIMAT0027837	mmu-miR-6967-3p	7	`_......`	2	85
MIMAT0025661	gga-miR-6577-5p	6	`_......`	1	85
MIMAT0023015	bra-miR1885b	8	`_......`	3	85
MIMAT0022120	osa-miR5487	2	`_......`	7	85
MIMAT0020480	bfl-miR-4891-5p	1	`_......`	6	85
MIMAT0019736	hsa-miR-4662b	2	`_......`	7	85
MIMAT0019709	hsa-miR-4647	2	`_......`	7	85
MIMAT0018941	hsa-miR-4426	2	`_......`	7	85
MIMAT0016793	cin-miR-4180-3p	8	`......_`	3	85
MIMAT0017902	rno-miR-741-3p	2	`_......`	7	85
MIMAT0016018	ppy-miR-576-3p	1	`_......`	6	85
MIMAT0015652	hsv2-miR-H6-3p	8	`_......`	3	85
MIMAT0015634	bmo-miR-3426	2	`_......`	7	85
MIMAT0015563	bmo-miR-3374-5p	3	`_......`	8	85
MIMAT0014649	tgu-miR-200b-5p	6	`......_`	1	85
MIMAT0013538	cte-miR-2686c	1	`_......`	6	85
MIMAT0013537	cte-miR-2686b	1	`_......`	6	85
MIMAT0013536	cte-miR-2686a-3p	1	`_......`	6	85
MIMAT0011564	crm-miR-48-3p	7	`_......`	2	85
MIMAT0010051	osa-miR2093-3p	7	`_......`	2	85
MIMAT0009442	mmu-miR-1969	1	`_......`	6	85
MIMAT0008250	ptr-miR-576	1	`_......`	6	85
MIMAT0007785	osa-miR1428e-3p	1	`......_`	6	85
MIMAT0007783	osa-miR1428d	1	`......_`	6	85
MIMAT0007782	osa-miR1428c	1	`......_`	6	85
MIMAT0007781	osa-miR1428b	1	`......_`	6	85
MIMAT0006437	mml-miR-576-3p	1	`_......`	6	85
MIMAT0007709	gga-miR-1795	3	`_......`	8	85
MIMAT0007616	gga-miR-1719	2	`_......`	7	85
MIMAT0007280	osa-miR1428a-3p	1	`......_`	6	85
MIMAT0005189	ppt-miR1063h	6	`_......`	1	85
MIMAT0005188	ppt-miR1063g	6	`_......`	1	85
MIMAT0005187	ppt-miR1063f	6	`_......`	1	85
MIMAT0005186	ppt-miR1063e	6	`_......`	1	85
MIMAT0005185	ppt-miR1063d	6	`_......`	1	85
MIMAT0005184	ppt-miR1063c	6	`_......`	1	85
MIMAT0005183	ppt-miR1063b	6	`_......`	1	85
MIMAT0005182	ppt-miR1063a	6	`_......`	1	85
MIMAT0004272	ath-miR850	1	`......_`	6	85
MIMAT0026700	mdo-miR-200b-5p	6	`......_`	1	85
MIMAT0004796	hsa-miR-576-3p	1	`_......`	6	85
MIMAT0001322	ath-miR414	7	`_......`	2	85
MIMAT0017128	rno-miR-141-5p	8	`_......`	3	85
MIMAT0004598	hsa-miR-141-5p	6	`_......`	1	85
MIMAT0004533	mmu-miR-141-5p	6	`_......`	1	85