| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taaggttg | 8 | ||
| MIMAT0024757 | nta-miR6155 | 1 | ........ | 8 | 100 |
| MIMAT0023386 | hco-miR-5911b | 1 | ........ | 8 | 100 |
| MIMAT0003414 | ebv-miR-BART6-5p | 1 | ........ | 8 | 100 |
| MIMAT0034047 | gra-miR8676 | 1 | _....... | 7 | 87 |
| MIMAT0033527 | sma-miR-8411-3p | 8 | ......._ | 2 | 87 |
| MIMAT0030102 | bdi-miR5174b-3p | 7 | _....... | 1 | 87 |
| MIMAT0030069 | bdi-miR5174e-3p.1 | 7 | _....... | 1 | 87 |
| MIMAT0019377 | pma-miR-10b-3p | 1 | _....... | 7 | 87 |
| MIMAT0036483 | tch-let-7a-5p | 1 | ......a. | 8 | 87 |
| MIMAT0029078 | gga-miR-7462-5p | 8 | .g...... | 1 | 87 |
| MIMAT0023998 | cgr-miR-672 | 1 | .g...... | 8 | 87 |
| MIMAT0020724 | bdi-miR5177 | 1 | .g...... | 8 | 87 |
| MIMAT0013242 | eca-miR-672 | 1 | .g...... | 8 | 87 |
| MIMAT0011686 | ppc-miR-2260 | 1 | ......g. | 8 | 87 |
| MIMAT0005327 | rno-miR-672-5p | 1 | .g...... | 8 | 87 |
| MIMAT0003735 | mmu-miR-672-5p | 1 | .g...... | 8 | 87 |
| MIMAT0037203 | ata-miR5062b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0037186 | ata-miR5062a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036958 | oha-miR-92a-5p | 1 | __...... | 6 | 75 |
| MIMAT0036937 | oha-miR-490-3p | 6 | __...... | 1 | 75 |
| MIMAT0036770 | oha-miR-18b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036768 | oha-miR-18a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036302 | chi-miR-92a-5p | 1 | __...... | 6 | 75 |
| MIMAT0036250 | chi-miR-490 | 6 | __...... | 1 | 75 |
| MIMAT0036248 | chi-miR-487b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036017 | chi-miR-18b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036015 | chi-miR-18a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035781 | tae-miR5062-5p | 8 | _......_ | 3 | 75 |
| MIMAT0035581 | dvi-miR-962-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035111 | efu-miR-9343 | 1 | __...... | 6 | 75 |
| MIMAT0034998 | efu-miR-92c | 1 | __...... | 6 | 75 |
| MIMAT0034997 | efu-miR-18 | 1 | ......__ | 6 | 75 |
| MIMAT0034909 | efu-miR-490 | 8 | __...... | 3 | 75 |
| MIMAT0034135 | gra-miR5207 | 3 | ......__ | 8 | 75 |
| MIMAT0033773 | pxy-miR-8530-3p | 1 | ......__ | 6 | 75 |
| MIMAT0033356 | str-miR-92-5p | 1 | __...... | 6 | 75 |
| MIMAT0032710 | ssa-miR-92a-4-5p | 1 | __...... | 6 | 75 |
| MIMAT0032707 | ssa-miR-92a-5p | 1 | __...... | 6 | 75 |
| MIMAT0032434 | ssa-miR-18b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0032432 | ssa-miR-18a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0030486 | prd-miR-7871-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029443 | ipu-miR-18a | 1 | ......__ | 6 | 75 |
| MIMAT0028937 | mdo-miR-7398i-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028929 | mdo-miR-7398j-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028766 | mdo-miR-18b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028354 | mml-miR-323b-5p | 1 | __...... | 6 | 75 |
| MIMAT0026248 | ccr-miR-18c | 1 | ......__ | 6 | 75 |
| MIMAT0026247 | ccr-miR-18b | 1 | ......__ | 6 | 75 |
| MIMAT0026246 | ccr-miR-18a | 1 | ......__ | 6 | 75 |
| MIMAT0027763 | mmu-miR-6931-3p | 8 | __...... | 3 | 75 |
| MIMAT0027527 | hsa-miR-6813-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025376 | ssc-miR-490 | 6 | __...... | 1 | 75 |
| MIMAT0026464 | hme-miR-6302-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0024976 | hme-miR-307 | 8 | __...... | 3 | 75 |
| MIMAT0027307 | ppe-miR6278 | 8 | _......_ | 3 | 75 |
| MIMAT0024309 | ggo-miR-18b | 1 | ......__ | 6 | 75 |
| MIMAT0024205 | ggo-miR-490 | 6 | __...... | 1 | 75 |
| MIMAT0024005 | cgr-miR-872-5p | 1 | _......_ | 6 | 75 |
| MIMAT0023952 | cgr-miR-410-5p | 1 | __...... | 6 | 75 |
| MIMAT0023941 | cgr-miR-377-5p | 3 | __...... | 8 | 75 |
| MIMAT0023817 | cgr-miR-18a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0023711 | hsa-miR-6086 | 3 | __...... | 8 | 75 |
| MIMAT0023668 | ame-miR-92c | 1 | __...... | 6 | 75 |
| MIMAT0022532 | ola-miR-18 | 1 | ......__ | 6 | 75 |
| MIMAT0023025 | bra-miR5726 | 3 | _......_ | 8 | 75 |
| MIMAT0022160 | osa-miR5525 | 8 | _......_ | 3 | 75 |
| MIMAT0021977 | aca-miR-490-3p | 6 | __...... | 1 | 75 |
| MIMAT0021819 | aca-miR-18b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0021817 | aca-miR-18a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0021316 | mtr-miR5277 | 1 | __...... | 6 | 75 |
| MIMAT0021221 | mtr-miR5235b | 2 | ......__ | 7 | 75 |
| MIMAT0021220 | mtr-miR5235a | 2 | ......__ | 7 | 75 |
| MIMAT0020626 | mmu-miR-5118 | 1 | _......_ | 6 | 75 |
| MIMAT0022985 | mmu-miR-5107-3p | 6 | __...... | 1 | 75 |
| MIMAT0020585 | ssc-miR-18b | 1 | ......__ | 6 | 75 |
| MIMAT0020568 | bdi-miR5062a | 8 | _......_ | 3 | 75 |
| MIMAT0019823 | hsa-miR-4714-3p | 7 | __...... | 2 | 75 |
| MIMAT0019387 | pma-miR-18a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0019355 | mmu-miR-3970 | 2 | __...... | 7 | 75 |
| MIMAT0019344 | mmu-miR-3964 | 2 | ......__ | 7 | 75 |
| MIMAT0019321 | oar-miR-377-5p | 3 | __...... | 8 | 75 |
| MIMAT0019275 | oar-miR-3958-5p | 1 | __...... | 6 | 75 |
| MIMAT0018988 | hsa-miR-4464 | 1 | _......_ | 6 | 75 |
| MIMAT0019226 | hsa-miR-3150b-5p | 6 | __...... | 1 | 75 |
| MIMAT0017979 | ssc-miR-494 | 1 | __...... | 6 | 75 |
| MIMAT0022960 | ssc-miR-490-3p | 6 | __...... | 1 | 75 |
| MIMAT0016686 | cin-miR-4101-3p | 2 | __...... | 7 | 75 |
| MIMAT0016310 | sja-miR-3501 | 6 | _......_ | 1 | 75 |
| MIMAT0016008 | ppy-miR-563 | 1 | __...... | 6 | 75 |
| MIMAT0015910 | ppy-miR-490-3p | 6 | __...... | 1 | 75 |
| MIMAT0015898 | ppy-miR-453 | 1 | __...... | 6 | 75 |
| MIMAT0015731 | ppy-miR-18b | 1 | ......__ | 6 | 75 |
| MIMAT0017602 | aly-miR823-3p | 2 | __...... | 7 | 75 |
| MIMAT0015413 | bmo-miR-3231 | 8 | ......__ | 3 | 75 |
| MIMAT0001630 | hsa-miR-323b-5p | 1 | __...... | 6 | 75 |
| MIMAT0019206 | hsa-miR-3150a-5p | 6 | __...... | 1 | 75 |
| MIMAT0014607 | tgu-miR-18b | 1 | ......__ | 6 | 75 |
| MIMAT0014587 | tgu-miR-18a | 1 | ......__ | 6 | 75 |
| MIMAT0027007 | tgu-miR-92-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0014548 | tgu-miR-490-3p | 6 | __...... | 1 | 75 |
| MIMAT0014296 | aae-miR-307 | 8 | __...... | 3 | 75 |
| MIMAT0013200 | eca-miR-18b | 1 | ......__ | 6 | 75 |
| MIMAT0013119 | eca-miR-872 | 1 | _......_ | 6 | 75 |
| MIMAT0013085 | eca-miR-18a | 1 | ......__ | 6 | 75 |
| MIMAT0013002 | eca-miR-703 | 8 | _......_ | 3 | 75 |
| MIMAT0012945 | eca-miR-490-3p | 6 | __...... | 1 | 75 |
| MIMAT0017372 | rno-miR-496-5p | 1 | __...... | 6 | 75 |
| MIMAT0012823 | rno-miR-490-3p | 6 | __...... | 1 | 75 |
| MIMAT0012496 | dsi-miR-962 | 2 | ......__ | 7 | 75 |
| MIMAT0012294 | dps-miR-2509 | 3 | ......__ | 8 | 75 |
| MIMAT0011987 | bta-miR-2420 | 1 | __...... | 6 | 75 |
| MIMAT0011927 | bta-miR-2325b | 1 | __...... | 6 | 75 |
| MIMAT0011913 | bta-miR-2369 | 3 | __...... | 8 | 75 |
| MIMAT0011393 | sme-miR-2156b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0009940 | cfa-miR-872 | 1 | _......_ | 6 | 75 |
| MIMAT0009890 | cfa-miR-377 | 3 | __...... | 8 | 75 |
| MIMAT0009875 | cfa-miR-490 | 6 | __...... | 1 | 75 |
| MIMAT0009832 | cfa-miR-18a | 1 | ......__ | 6 | 75 |
| MIMAT0009831 | cfa-miR-18b | 1 | ......__ | 6 | 75 |
| MIMAT0009799 | nve-miR-2038-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019161 | spu-miR-125-3p | 3 | __...... | 8 | 75 |
| MIMAT0009331 | bta-miR-490 | 6 | __...... | 1 | 75 |
| MIMAT0009325 | bta-miR-453 | 1 | __...... | 6 | 75 |
| MIMAT0008165 | ptr-miR-490 | 6 | __...... | 1 | 75 |
| MIMAT0008155 | ptr-miR-453 | 1 | __...... | 6 | 75 |
| MIMAT0008054 | ptr-miR-18b | 1 | ......__ | 6 | 75 |
| MIMAT0011148 | xla-miR-703 | 8 | _......_ | 3 | 75 |
| MIMAT0026906 | mml-miR-656-5p | 1 | __...... | 6 | 75 |
| MIMAT0026885 | mml-miR-494-5p | 1 | __...... | 6 | 75 |
| MIMAT0006351 | mml-miR-490-3p | 6 | __...... | 1 | 75 |
| MIMAT0006337 | mml-miR-453 | 1 | __...... | 6 | 75 |
| MIMAT0026869 | mml-miR-410-5p | 1 | __...... | 6 | 75 |
| MIMAT0026864 | mml-miR-377-5p | 3 | __...... | 8 | 75 |
| MIMAT0006163 | mml-miR-18b | 1 | ......__ | 6 | 75 |
| MIMAT0007513 | gga-miR-1814 | 1 | __...... | 6 | 75 |
| MIMAT0009170 | oan-miR-92a-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0006851 | oan-miR-18-5p | 1 | ......__ | 6 | 75 |
| MIMAT0006811 | oan-miR-490-3p | 6 | __...... | 1 | 75 |
| MIMAT0017303 | rno-miR-410-5p | 1 | __...... | 6 | 75 |
| MIMAT0005282 | rno-miR-872-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005476 | dme-miR-962-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004934 | mmu-miR-872-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004870 | mmu-miR-453 | 1 | __...... | 6 | 75 |
| MIMAT0004858 | mmu-miR-18b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0026709 | mdo-miR-92a-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0004167 | mdo-miR-18a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0020350 | cel-miR-791-5p | 6 | ......__ | 1 | 75 |
| MIMAT0003780 | mmu-miR-490-3p | 6 | __...... | 1 | 75 |
| MIMAT0003706 | xtr-miR-18b | 1 | ......__ | 6 | 75 |
| MIMAT0003652 | xtr-miR-18a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0003526 | bta-miR-18a | 1 | ......__ | 6 | 75 |
| MIMAT0003517 | bta-miR-18b | 1 | ......__ | 6 | 75 |
| MIMAT0003493 | mmu-miR-703 | 8 | _......_ | 3 | 75 |
| MIMAT0017244 | mmu-miR-496a-5p | 1 | __...... | 6 | 75 |
| MIMAT0003437 | rlcv-miR-rL1-8-5p | 1 | ......__ | 6 | 75 |
| MIMAT0003366 | gga-miR-490-3p | 6 | __...... | 1 | 75 |
| MIMAT0026627 | hsa-miR-656-5p | 1 | __...... | 6 | 75 |
| MIMAT0003227 | hsa-miR-563 | 1 | __...... | 6 | 75 |
| MIMAT0017218 | rno-miR-494-5p | 1 | __...... | 6 | 75 |
| MIMAT0017215 | mmu-miR-494-5p | 1 | __...... | 6 | 75 |
| MIMAT0017203 | rno-miR-377-5p | 3 | __...... | 8 | 75 |
| MIMAT0002919 | tni-miR-18 | 1 | ......__ | 6 | 75 |
| MIMAT0002918 | fru-miR-18 | 1 | ......__ | 6 | 75 |
| MIMAT0026607 | hsa-miR-494-5p | 1 | __...... | 6 | 75 |
| MIMAT0002806 | hsa-miR-490-3p | 6 | __...... | 1 | 75 |
| MIMAT0002723 | mne-miR-18 | 1 | ......__ | 6 | 75 |
| MIMAT0002716 | lla-miR-18 | 1 | ......__ | 6 | 75 |
| MIMAT0002709 | sla-miR-18 | 1 | ......__ | 6 | 75 |
| MIMAT0002702 | mml-miR-18a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0002695 | ptr-miR-18a | 1 | ......__ | 6 | 75 |
| MIMAT0002688 | ppy-miR-18a | 1 | ......__ | 6 | 75 |
| MIMAT0002681 | ppa-miR-18 | 1 | ......__ | 6 | 75 |
| MIMAT0002674 | age-miR-18 | 1 | ......__ | 6 | 75 |
| MIMAT0002667 | lca-miR-18 | 1 | ......__ | 6 | 75 |
| MIMAT0002660 | ggo-miR-18a | 1 | ......__ | 6 | 75 |
| MIMAT0026558 | hsa-miR-410-5p | 1 | __...... | 6 | 75 |
| MIMAT0002161 | ssc-miR-18a | 1 | ......__ | 6 | 75 |
| MIMAT0031954 | dre-miR-92a-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0031953 | dre-miR-92a-5p | 1 | __...... | 6 | 75 |
| MIMAT0001781 | dre-miR-18c | 1 | ......__ | 6 | 75 |
| MIMAT0001780 | dre-miR-18b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001779 | dre-miR-18a | 1 | ......__ | 6 | 75 |
| MIMAT0001412 | hsa-miR-18b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001349 | xla-miR-18 | 1 | ......__ | 6 | 75 |
| MIMAT0001141 | gga-miR-18b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001113 | gga-miR-18a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0026495 | gga-miR-92-5p | 1 | __...... | 6 | 75 |
| MIMAT0017172 | mmu-miR-410-5p | 1 | __...... | 6 | 75 |
| MIMAT0017107 | rno-miR-92a-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0000787 | rno-miR-18a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017079 | mmu-miR-377-5p | 3 | __...... | 8 | 75 |
| MIMAT0004689 | hsa-miR-377-5p | 3 | __...... | 8 | 75 |
| MIMAT0017066 | mmu-miR-92a-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0000528 | mmu-miR-18a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0004507 | hsa-miR-92a-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0000072 | hsa-miR-18a-5p | 1 | ......__ | 6 | 75 |
