| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taatagcc | 8 | ||
| MIMAT0015643 | mmu-miR-3472 | 1 | ........ | 8 | 100 |
| MIMAT0012733 | mdv2-miR-M32-3p | 1 | ........ | 8 | 100 |
| MIMAT0033649 | sma-miR-8465-5p | 2 | ......._ | 8 | 87 |
| MIMAT0033242 | ppc-miR-8347-5p | 8 | _....... | 2 | 87 |
| MIMAT0028672 | mdo-miR-7332-5p | 2 | _....... | 8 | 87 |
| MIMAT0016473 | cin-miR-4006b-3p | 7 | ......._ | 1 | 87 |
| MIMAT0031049 | mdo-miR-7359b-3p | 1 | .c...... | 8 | 87 |
| MIMAT0028731 | mdo-miR-7359a-3p | 1 | .c...... | 8 | 87 |
| MIMAT0028536 | mdo-miR-7281-5p | 1 | ......g. | 8 | 87 |
| MIMAT0007402 | hsa-miR-103b | 1 | .c...... | 8 | 87 |
| MIMAT0036712 | oha-miR-138-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036337 | gma-miR9722 | 1 | ......__ | 6 | 75 |
| MIMAT0035414 | nve-miR-9453 | 8 | _......_ | 3 | 75 |
| MIMAT0035312 | gsa-miR-1992-5p | 8 | __...... | 3 | 75 |
| MIMAT0035215 | dme-miR-9376-5p | 1 | __...... | 6 | 75 |
| MIMAT0033906 | atr-miR8614 | 2 | _......_ | 7 | 75 |
| MIMAT0033536 | sma-miR-8416-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032961 | ppc-miR-8248-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032353 | ssa-miR-138-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030495 | prd-miR-34-3p | 8 | __...... | 3 | 75 |
| MIMAT0030432 | bta-miR-7857 | 1 | __...... | 6 | 75 |
| MIMAT0030204 | bdi-miR7717c-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030020 | hsa-miR-7705 | 1 | _......_ | 6 | 75 |
| MIMAT0028457 | mdo-miR-7245-3p | 6 | __...... | 1 | 75 |
| MIMAT0028053 | mmu-miR-7073-3p | 1 | __...... | 6 | 75 |
| MIMAT0023461 | hco-miR-5958 | 2 | __...... | 7 | 75 |
| MIMAT0023396 | hco-miR-5921-3p | 7 | ......__ | 2 | 75 |
| MIMAT0022387 | ath-miR5628 | 3 | _......_ | 8 | 75 |
| MIMAT0021758 | aca-miR-138-1-3p | 6 | _......_ | 1 | 75 |
| MIMAT0020471 | bfl-miR-4885 | 6 | __...... | 1 | 75 |
| MIMAT0019304 | oar-miR-487a-5p | 8 | __...... | 3 | 75 |
| MIMAT0019004 | hsa-miR-4477a | 6 | ......__ | 1 | 75 |
| MIMAT0018071 | hsa-miR-3651 | 2 | __...... | 7 | 75 |
| MIMAT0017961 | ssc-miR-376b | 8 | __...... | 3 | 75 |
| MIMAT0017944 | ath-miR4228-5p | 1 | __...... | 6 | 75 |
| MIMAT0016072 | ppy-miR-633 | 2 | ......__ | 7 | 75 |
| MIMAT0015498 | bmo-miR-3309 | 3 | ......__ | 8 | 75 |
| MIMAT0031021 | tgu-miR-138-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0014426 | cqu-miR-31-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014312 | aae-miR-282-3p | 3 | __...... | 8 | 75 |
| MIMAT0012871 | hvt-miR-H16-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012308 | dps-miR-2520 | 1 | _......_ | 6 | 75 |
| MIMAT0013779 | sme-miR-31b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0009817 | nve-miR-2046-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032059 | dvi-miR-282-3p | 3 | __...... | 8 | 75 |
| MIMAT0019126 | tca-miR-282-3p | 3 | __...... | 8 | 75 |
| MIMAT0019106 | tca-miR-31-3p | 6 | __...... | 1 | 75 |
| MIMAT0008290 | ptr-miR-633 | 1 | ......__ | 6 | 75 |
| MIMAT0006478 | mml-miR-633 | 2 | ......__ | 7 | 75 |
| MIMAT0007558 | gga-miR-1674 | 7 | __...... | 2 | 75 |
| MIMAT0007220 | oan-miR-138-3p | 6 | _......_ | 1 | 75 |
| MIMAT0005259 | smo-miR1102 | 7 | _......_ | 2 | 75 |
| MIMAT0011413 | sme-miR-31b-1-3p | 8 | _......_ | 3 | 75 |
| MIMAT0015235 | bmo-miR-283-3p | 8 | __...... | 3 | 75 |
| MIMAT0015234 | bmo-miR-282-3p | 3 | __...... | 8 | 75 |
| MIMAT0003303 | hsa-miR-633 | 2 | ......__ | 7 | 75 |
| MIMAT0031973 | dre-miR-138-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017127 | rno-miR-138-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004596 | hsa-miR-138-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0020825 | dme-miR-31b-3p | 6 | __...... | 1 | 75 |
| MIMAT0020809 | dme-miR-282-3p | 3 | __...... | 8 | 75 |
| MIMAT0020336 | cel-miR-245-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016987 | mmu-miR-138-2-3p | 6 | _......_ | 1 | 75 |
