| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taattaca | 8 | ||
| MIMAT0035679 | bra-miR9555b-5p | 7 | _....... | 1 | 87 |
| MIMAT0035170 | efu-miR-9359 | 1 | ......._ | 7 | 87 |
| MIMAT0035170 | efu-miR-9359 | 6 | ......__ | 1 | 75 |
| MIMAT0032816 | cel-miR-8201-3p | 1 | _....... | 7 | 87 |
| MIMAT0032810 | cel-miR-8198-3p | 1 | ......._ | 7 | 87 |
| MIMAT0032810 | cel-miR-8198-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030337 | hhi-miR-7792 | 7 | _....... | 1 | 87 |
| MIMAT0029627 | crm-miR-7609 | 7 | _....... | 1 | 87 |
| MIMAT0029025 | oan-miR-7435-3p | 1 | _....... | 7 | 87 |
| MIMAT0018839 | tca-miR-3873-3p | 8 | _....... | 2 | 87 |
| MIMAT0005400 | cre-miR1153-3p.2 | 8 | _....... | 2 | 87 |
| MIMAT0005032 | cel-miR-1019-3p | 8 | _....... | 2 | 87 |
| MIMAT0033637 | sma-miR-8460-5p | 1 | ......t. | 8 | 87 |
| MIMAT0033637 | sma-miR-8460-5p | 6 | ......__ | 1 | 75 |
| MIMAT0033520 | sma-miR-8408-5p | 1 | ......t. | 8 | 87 |
| MIMAT0033520 | sma-miR-8408-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032520 | ssa-miR-2187-5p | 8 | ......a. | 1 | 87 |
| MIMAT0032520 | ssa-miR-2187-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030392 | ptc-miR7833 | 1 | ......g. | 8 | 87 |
| MIMAT0030392 | ptc-miR7833 | 6 | ......__ | 1 | 75 |
| MIMAT0029999 | mtr-miR7699-3p | 8 | .g...... | 1 | 87 |
| MIMAT0022222 | mtr-miR5559-3p | 8 | ......g. | 1 | 87 |
| MIMAT0022222 | mtr-miR5559-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021319 | mtr-miR5280 | 1 | ......g. | 8 | 87 |
| MIMAT0021319 | mtr-miR5280 | 6 | ......__ | 1 | 75 |
| MIMAT0018167 | mghv-miR-M1-10-3p | 1 | .g...... | 8 | 87 |
| MIMAT0036806 | oha-miR-20b-3p | 8 | __...... | 3 | 75 |
| MIMAT0036380 | gma-miR9751 | 6 | _......_ | 1 | 75 |
| MIMAT0036198 | chi-miR-380-3p | 8 | __...... | 3 | 75 |
| MIMAT0034697 | eca-miR-8908b | 1 | ......__ | 6 | 75 |
| MIMAT0034697 | eca-miR-8908b | 6 | ......__ | 1 | 75 |
| MIMAT0034429 | cfa-miR-8908a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0034429 | cfa-miR-8908a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0034036 | gra-miR8665 | 2 | ......__ | 7 | 75 |
| MIMAT0034036 | gra-miR8665 | 7 | ......__ | 2 | 75 |
| MIMAT0033896 | atr-miR8607 | 8 | __...... | 3 | 75 |
| MIMAT0033796 | pxy-miR-8539-5p | 7 | _......_ | 2 | 75 |
| MIMAT0033664 | sma-miR-8472-3p | 1 | ......__ | 6 | 75 |
| MIMAT0033664 | sma-miR-8472-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033551 | sma-miR-8423-3p | 1 | ......__ | 6 | 75 |
| MIMAT0033551 | sma-miR-8423-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033513 | sma-miR-8405-3p | 1 | ......__ | 6 | 75 |
| MIMAT0033513 | sma-miR-8405-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033466 | str-miR-37b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032430 | ssa-miR-183-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031182 | stu-miR7981-5p | 3 | ......__ | 8 | 75 |
| MIMAT0031182 | stu-miR7981-5p | 8 | ......__ | 3 | 75 |
| MIMAT0030838 | prd-miR-7968-5p | 2 | __...... | 7 | 75 |
| MIMAT0030823 | prd-miR-7957c-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030669 | prd-miR-7957b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030276 | bdi-miR7708b-5p | 2 | __...... | 7 | 75 |
| MIMAT0030134 | bdi-miR7708a-3p | 6 | __...... | 1 | 75 |
| MIMAT0029470 | ipu-miR-2187 | 2 | ......__ | 7 | 75 |
| MIMAT0029470 | ipu-miR-2187 | 7 | ......__ | 2 | 75 |
| MIMAT0029021 | oan-miR-216b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028925 | mdo-miR-7398s-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025465 | hsa-miR-6504-3p | 2 | __...... | 7 | 75 |
| MIMAT0024195 | ggo-miR-380 | 8 | __...... | 3 | 75 |
| MIMAT0024120 | ggo-miR-92b | 2 | __...... | 7 | 75 |
| MIMAT0023110 | tur-miR-5738-5p | 8 | __...... | 3 | 75 |
| MIMAT0022347 | cin-miR-5610-5p | 3 | ......__ | 8 | 75 |
| MIMAT0022347 | cin-miR-5610-5p | 8 | ......__ | 3 | 75 |
| MIMAT0022206 | mtr-miR2592bl-3p | 8 | _......_ | 3 | 75 |
| MIMAT0021864 | aca-miR-20b-3p | 8 | __...... | 3 | 75 |
| MIMAT0021410 | osa-miR5337a | 2 | _......_ | 7 | 75 |
| MIMAT0020221 | dme-miR-4985-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019254 | oar-miR-380-3p | 8 | __...... | 3 | 75 |
| MIMAT0018910 | tca-miR-3903-3p | 3 | __...... | 8 | 75 |
| MIMAT0016905 | hsa-miR-4275 | 3 | _......_ | 8 | 75 |
| MIMAT0016702 | cin-miR-4112-3p | 8 | __...... | 3 | 75 |
| MIMAT0016003 | ppy-miR-556-3p | 3 | __...... | 8 | 75 |
| MIMAT0015870 | ppy-miR-380 | 8 | __...... | 3 | 75 |
| MIMAT0015498 | bmo-miR-3309 | 6 | __...... | 1 | 75 |
| MIMAT0015477 | bmo-miR-3290 | 8 | __...... | 3 | 75 |
| MIMAT0027018 | tgu-miR-216b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027017 | tgu-miR-20b-3p | 8 | __...... | 3 | 75 |
| MIMAT0013148 | eca-miR-380 | 8 | __...... | 3 | 75 |
| MIMAT0011296 | dre-miR-2187-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011296 | dre-miR-2187-5p | 7 | ......__ | 2 | 75 |
| MIMAT0009979 | hsa-miR-2054 | 7 | __...... | 2 | 75 |
| MIMAT0008132 | ptr-miR-380 | 8 | __...... | 3 | 75 |
| MIMAT0006717 | cfa-miR-380 | 8 | __...... | 3 | 75 |
| MIMAT0006425 | mml-miR-556-3p | 3 | __...... | 8 | 75 |
| MIMAT0006309 | mml-miR-380-3p | 8 | __...... | 3 | 75 |
| MIMAT0006048 | odi-miR-1495 | 8 | __...... | 3 | 75 |
| MIMAT0006854 | oan-miR-20b-3p | 8 | __...... | 3 | 75 |
| MIMAT0026691 | mdo-miR-183-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003804 | bta-miR-380-3p | 8 | __...... | 3 | 75 |
| MIMAT0002182 | kshv-miR-K12-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0002072 | ptc-miR476b | 8 | _......_ | 3 | 75 |
| MIMAT0001507 | aga-miR-263a | 6 | __...... | 1 | 75 |
| MIMAT0026551 | gga-miR-20b-3p | 8 | __...... | 3 | 75 |
| MIMAT0031921 | dre-miR-183-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017141 | rno-miR-183-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000735 | hsa-miR-380-3p | 8 | __...... | 3 | 75 |
