| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | taattgt | 7 | ||
| MIMAT0029021 | oan-miR-216b-3p | 7 | ....... | 1 | 100 |
| MIMAT0028173 | dev-miR-D4-3p | 2 | ....... | 8 | 100 |
| MIMAT0024813 | hvu-miR5049d | 8 | ....... | 2 | 100 |
| MIMAT0023248 | gma-miR5674b | 1 | ....... | 7 | 100 |
| MIMAT0022459 | gma-miR5674a | 1 | ....... | 7 | 100 |
| MIMAT0027018 | tgu-miR-216b-3p | 7 | ....... | 1 | 100 |
| MIMAT0037083 | ssc-miR-219b-3p | 3 | _...... | 8 | 85 |
| MIMAT0036384 | gma-miR9753 | 6 | _...... | 1 | 85 |
| MIMAT0035679 | bra-miR9555b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0034667 | eca-miR-9118 | 8 | _...... | 3 | 85 |
| MIMAT0034332 | cfa-miR-8839 | 1 | ......_ | 6 | 85 |
| MIMAT0033800 | pxy-miR-8541 | 1 | ......_ | 6 | 85 |
| MIMAT0032752 | ssa-miR-7552a-5p | 8 | _...... | 3 | 85 |
| MIMAT0032750 | ssa-miR-7552b-5p | 8 | _...... | 3 | 85 |
| MIMAT0032529 | ssa-miR-219b-3p | 3 | _...... | 8 | 85 |
| MIMAT0032527 | ssa-miR-219a-3p | 3 | _...... | 8 | 85 |
| MIMAT0031203 | stu-miR8025-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030424 | hsa-miR-7849-3p | 7 | _...... | 2 | 85 |
| MIMAT0029975 | mtr-miR2664b | 1 | _...... | 6 | 85 |
| MIMAT0029474 | ipu-miR-219a | 3 | _...... | 8 | 85 |
| MIMAT0028978 | oan-miR-7415-5p | 2 | _...... | 7 | 85 |
| MIMAT0024803 | hvu-miR5049c | 8 | _...... | 3 | 85 |
| MIMAT0024732 | nta-miR6025d | 7 | _...... | 2 | 85 |
| MIMAT0023472 | hco-miR-5965 | 7 | _...... | 2 | 85 |
| MIMAT0021403 | rmi-miR-5330 | 2 | _...... | 7 | 85 |
| MIMAT0018652 | tca-miR-3814-5p | 7 | _...... | 2 | 85 |
| MIMAT0016787 | cin-miR-4177-3p | 1 | ......_ | 6 | 85 |
| MIMAT0016658 | cin-miR-4084-3p | 8 | _...... | 3 | 85 |
| MIMAT0016563 | cin-miR-4037-5p | 6 | _...... | 1 | 85 |
| MIMAT0017684 | aly-miR773b-3p | 1 | _...... | 6 | 85 |
| MIMAT0016949 | rlcv-miR-rL1-25-3p | 8 | _...... | 3 | 85 |
| MIMAT0012568 | aqc-miR171c | 1 | ......_ | 6 | 85 |
| MIMAT0012565 | aqc-miR171f | 1 | ......_ | 6 | 85 |
| MIMAT0013471 | mtr-miR2664a | 1 | _...... | 6 | 85 |
| MIMAT0013311 | mtr-miR2606b | 7 | _...... | 2 | 85 |
| MIMAT0013310 | mtr-miR2606a | 7 | _...... | 2 | 85 |
| MIMAT0011673 | ppc-miR-2244 | 8 | _...... | 3 | 85 |
| MIMAT0011462 | cel-miR-2220-3p | 3 | _...... | 8 | 85 |
| MIMAT0012547 | bta-miR-219-3p | 3 | _...... | 8 | 85 |
| MIMAT0008091 | ptr-miR-302f | 1 | ......_ | 6 | 85 |
| MIMAT0009194 | ptr-miR-219-2-3p | 3 | _...... | 8 | 85 |
| MIMAT0007774 | osa-miR1853-3p | 1 | ......_ | 6 | 85 |
| MIMAT0006729 | cfa-miR-219-3p | 3 | _...... | 8 | 85 |
| MIMAT0006246 | mml-miR-219-3p | 3 | _...... | 8 | 85 |
| MIMAT0007286 | gga-miR-1416-3p | 6 | _...... | 1 | 85 |
| MIMAT0007286 | gga-miR-1416-3p | 3 | _...... | 8 | 85 |
| MIMAT0006900 | oan-miR-219-3p | 3 | _...... | 8 | 85 |
| MIMAT0005932 | hsa-miR-302f | 1 | ......_ | 6 | 85 |
| MIMAT0026681 | mdo-miR-219-1-3p | 3 | _...... | 8 | 85 |
| MIMAT0020354 | cel-miR-800-5p | 8 | _...... | 3 | 85 |
| MIMAT0031956 | dre-miR-96-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005446 | rno-miR-219a-2-3p | 3 | _...... | 8 | 85 |
| MIMAT0022841 | mmu-miR-219a-2-3p | 3 | _...... | 8 | 85 |
| MIMAT0004675 | hsa-miR-219a-2-3p | 3 | _...... | 8 | 85 |
