| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tacacca | 7 | ||
| MIMAT0035345 | gsa-miR-9399-3p | 7 | ....... | 1 | 100 |
| MIMAT0027330 | ppe-miR6294 | 7 | ....... | 1 | 100 |
| MIMAT0013580 | cte-miR-2711 | 8 | ....... | 2 | 100 |
| MIMAT0037215 | ata-miR1432-3p | 7 | _...... | 2 | 85 |
| MIMAT0035592 | dvi-miR-971-3p | 7 | _...... | 2 | 85 |
| MIMAT0034986 | efu-miR-9312 | 2 | _...... | 7 | 85 |
| MIMAT0034876 | efu-miR-9257 | 7 | _...... | 2 | 85 |
| MIMAT0034532 | eca-miR-8986b | 6 | _...... | 1 | 85 |
| MIMAT0034477 | eca-miR-8948 | 6 | _...... | 1 | 85 |
| MIMAT0034232 | gra-miR8782 | 8 | _...... | 3 | 85 |
| MIMAT0033170 | ppc-miR-8316-3p | 7 | _...... | 2 | 85 |
| MIMAT0031535 | ppe-miR3627-3p | 6 | _...... | 1 | 85 |
| MIMAT0031181 | hsa-miR-7978 | 8 | _...... | 3 | 85 |
| MIMAT0030563 | prd-miR-7911c-3p | 8 | _...... | 3 | 85 |
| MIMAT0029035 | gga-miR-7440-3p | 8 | _...... | 3 | 85 |
| MIMAT0028888 | mdo-miR-7395-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028648 | mdo-miR-7324-5p | 3 | _...... | 8 | 85 |
| MIMAT0027444 | hsa-miR-6772-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025752 | gga-miR-6652-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025408 | tgu-miR-1789 | 8 | ......_ | 3 | 85 |
| MIMAT0024998 | hme-miR-971 | 7 | _...... | 2 | 85 |
| MIMAT0022165 | osa-miR5530 | 8 | _...... | 3 | 85 |
| MIMAT0021212 | mtr-miR5228 | 8 | _...... | 3 | 85 |
| MIMAT0020519 | ath-miR5015 | 7 | _...... | 2 | 85 |
| MIMAT0020189 | dme-miR-4965-3p | 3 | _...... | 8 | 85 |
| MIMAT0020161 | dme-miR-4949-3p | 8 | _...... | 3 | 85 |
| MIMAT0019877 | hsa-miR-3591-3p | 3 | _...... | 8 | 85 |
| MIMAT0018827 | tca-miR-3867-3p | 1 | ......_ | 6 | 85 |
| MIMAT0018695 | tca-miR-3832-3p | 1 | _...... | 6 | 85 |
| MIMAT0018171 | mghv-miR-M1-12-3p | 8 | _...... | 3 | 85 |
| MIMAT0018544 | ame-miR-971 | 7 | _...... | 2 | 85 |
| MIMAT0018010 | vvi-miR2950-3p | 6 | _...... | 1 | 85 |
| MIMAT0016805 | cin-miR-4187-5p | 8 | _...... | 3 | 85 |
| MIMAT0016784 | cin-miR-4175-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017893 | rno-miR-3591 | 2 | _...... | 7 | 85 |
| MIMAT0017862 | rno-miR-3576 | 3 | _...... | 8 | 85 |
| MIMAT0017854 | rno-miR-1188-5p | 6 | _...... | 1 | 85 |
| MIMAT0014745 | api-miR-971 | 7 | _...... | 2 | 85 |
| MIMAT0014434 | cqu-miR-2941-1-5p | 8 | _...... | 3 | 85 |
| MIMAT0014348 | ghr-miR2950 | 6 | _...... | 1 | 85 |
| MIMAT0019191 | rlcv-miR-rL1-26-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012357 | dps-miR-2548-3p | 8 | _...... | 3 | 85 |
| MIMAT0012226 | dps-miR-971-3p | 7 | _...... | 2 | 85 |
| MIMAT0007702 | gga-miR-1789 | 8 | ......_ | 3 | 85 |
| MIMAT0006140 | mdo-miR-1541 | 6 | _...... | 1 | 85 |
| MIMAT0007346 | gga-miR-1467-3p | 3 | _...... | 8 | 85 |
| MIMAT0005843 | mmu-miR-1188-5p | 6 | _...... | 1 | 85 |
| MIMAT0005487 | dme-miR-971-3p | 7 | _...... | 2 | 85 |
| MIMAT0004321 | ath-miR869.2 | 8 | _...... | 3 | 85 |
| MIMAT0015220 | hsv1-miR-H1-3p | 1 | ......_ | 6 | 85 |
| MIMAT0026573 | mml-miR-21-3p | 3 | _...... | 8 | 85 |
| MIMAT0002180 | kshv-miR-K12-10b | 6 | _...... | 1 | 85 |
| MIMAT0004494 | hsa-miR-21-3p | 3 | _...... | 8 | 85 |
