| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tacagatg | 8 | ||
| MIMAT0022472 | hsa-miR-5683 | 1 | ........ | 8 | 100 |
| MIMAT0036399 | gma-miR9762 | 1 | ......._ | 7 | 87 |
| MIMAT0035304 | gsa-miR-993-5p | 7 | ......._ | 1 | 87 |
| MIMAT0029827 | mmu-miR-7660-3p | 7 | ......._ | 1 | 87 |
| MIMAT0028890 | mdo-miR-7396-5p | 8 | ......._ | 2 | 87 |
| MIMAT0018114 | hsa-miR-3686 | 7 | ......._ | 1 | 87 |
| MIMAT0011849 | bta-miR-1721 | 2 | _....... | 8 | 87 |
| MIMAT0011789 | dme-miR-2281-3p | 8 | ......._ | 2 | 87 |
| MIMAT0005239 | smo-miR1087 | 1 | ......._ | 7 | 87 |
| MIMAT0020872 | dme-miR-975-3p | 1 | _....... | 7 | 87 |
| MIMAT0029646 | crm-miR-254 | 1 | ......a. | 8 | 87 |
| MIMAT0025135 | mmu-miR-6388 | 1 | .g...... | 8 | 87 |
| MIMAT0021619 | gma-miR5378 | 8 | .t...... | 1 | 87 |
| MIMAT0014446 | cel-miR-2953-5p | 1 | ......a. | 8 | 87 |
| MIMAT0007256 | oan-miR-1414-3p | 8 | .g...... | 1 | 87 |
| MIMAT0031891 | cel-miR-254-5p | 1 | ......a. | 8 | 87 |
| MIMAT0035914 | chi-miR-10b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035806 | tae-miR6197-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035593 | dvi-miR-973-3p | 6 | _......_ | 1 | 75 |
| MIMAT0034956 | efu-miR-9295 | 6 | ......__ | 1 | 75 |
| MIMAT0034920 | efu-miR-10 | 1 | _......_ | 6 | 75 |
| MIMAT0034892 | efu-miR-9264 | 1 | ......__ | 6 | 75 |
| MIMAT0034592 | eca-miR-9048 | 7 | __...... | 2 | 75 |
| MIMAT0034167 | gra-miR167c | 2 | __...... | 7 | 75 |
| MIMAT0033897 | atr-miR2111 | 8 | _......_ | 3 | 75 |
| MIMAT0033772 | pxy-miR-8530-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032298 | ssa-miR-10b-3-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032297 | ssa-miR-10b-2-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031649 | bbe-miR-217-3p | 7 | _......_ | 2 | 75 |
| MIMAT0031393 | mmu-miR-8092 | 8 | __...... | 3 | 75 |
| MIMAT0030481 | prd-miR-7869-3p | 8 | ......__ | 3 | 75 |
| MIMAT0030335 | hhi-miR-723 | 8 | _......_ | 3 | 75 |
| MIMAT0029787 | tgu-miR-7643-3p | 8 | __...... | 3 | 75 |
| MIMAT0029060 | gga-miR-7453-5p | 2 | __...... | 7 | 75 |
| MIMAT0028892 | mdo-miR-7397-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028646 | mdo-miR-7323-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028381 | mml-miR-7207-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028340 | mml-miR-7191-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028146 | ssc-miR-7135-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028098 | ddi-miR-7095-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027777 | mmu-miR-6938-3p | 7 | __...... | 2 | 75 |
| MIMAT0027677 | hsa-miR-6888-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025735 | gga-miR-6639-5p | 1 | ......__ | 6 | 75 |
| MIMAT0025656 | gga-miR-6574-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025061 | rno-miR-6322 | 8 | ......__ | 3 | 75 |
| MIMAT0024841 | hvu-miR6213 | 1 | _......_ | 6 | 75 |
| MIMAT0024798 | hvu-miR1130 | 6 | ......__ | 1 | 75 |
| MIMAT0024343 | mml-miR-1284 | 6 | ......__ | 1 | 75 |
| MIMAT0027109 | mml-miR-1298-3p | 6 | __...... | 1 | 75 |
| MIMAT0023868 | cgr-miR-2424 | 1 | _......_ | 6 | 75 |
| MIMAT0023738 | cgr-miR-10b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023324 | hco-miR-5889 | 8 | ......__ | 3 | 75 |
| MIMAT0023115 | tur-miR-305-3p | 8 | __...... | 3 | 75 |
| MIMAT0022449 | gma-miR5667-3p | 3 | _......_ | 8 | 75 |
| MIMAT0022083 | aca-miR-5456 | 6 | ......__ | 1 | 75 |
| MIMAT0022013 | aca-miR-5402-3p | 7 | ......__ | 2 | 75 |
| MIMAT0021395 | rmi-miR-5322 | 7 | ......__ | 2 | 75 |
| MIMAT0027081 | bdi-miR5173-3p | 8 | __...... | 3 | 75 |
| MIMAT0019951 | hsa-miR-1245b-3p | 2 | __...... | 7 | 75 |
| MIMAT0019873 | hsa-miR-4742-3p | 6 | ......__ | 1 | 75 |
| MIMAT0018141 | pab-miR3709a | 2 | __...... | 7 | 75 |
| MIMAT0016739 | cin-miR-4140-3p | 3 | __...... | 8 | 75 |
| MIMAT0016654 | cin-miR-4082-3p | 8 | ......__ | 3 | 75 |
| MIMAT0016652 | cin-miR-4081-3p | 8 | ......__ | 3 | 75 |
| MIMAT0016620 | cin-miR-4066-5p | 2 | __...... | 7 | 75 |
| MIMAT0016519 | cin-miR-4014-3p | 2 | ......__ | 7 | 75 |
| MIMAT0015005 | hsa-miR-3137 | 6 | ......__ | 1 | 75 |
| MIMAT0015377 | hsa-miR-3126-3p | 6 | __...... | 1 | 75 |
| MIMAT0014900 | mmu-miR-3089-3p | 8 | __...... | 3 | 75 |
| MIMAT0013831 | osa-miR2879 | 3 | __...... | 8 | 75 |
| MIMAT0012474 | dsi-miR-963-3p | 8 | __...... | 3 | 75 |
| MIMAT0012044 | bta-miR-2459 | 3 | __...... | 8 | 75 |
| MIMAT0011409 | sme-miR-2205-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019155 | sko-miR-34-3p | 8 | __...... | 3 | 75 |
| MIMAT0009407 | mmu-miR-1942 | 2 | __...... | 7 | 75 |
| MIMAT0007674 | gga-miR-1766 | 3 | __...... | 8 | 75 |
| MIMAT0007605 | gga-miR-1710 | 7 | __...... | 2 | 75 |
| MIMAT0007456 | gga-miR-1593 | 8 | __...... | 3 | 75 |
| MIMAT0026764 | gga-miR-1462-3p | 7 | _......_ | 2 | 75 |
| MIMAT0007176 | oan-miR-1390-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020858 | dme-miR-963-3p | 8 | __...... | 3 | 75 |
| MIMAT0004883 | mmu-miR-466g | 2 | ......__ | 7 | 75 |
| MIMAT0014810 | mmu-miR-1298-3p | 6 | __...... | 1 | 75 |
| MIMAT0026641 | hsa-miR-1298-3p | 6 | __...... | 1 | 75 |
| MIMAT0002070 | ptc-miR475d-3p | 2 | ......__ | 7 | 75 |
| MIMAT0001636 | hsa-miR-452-3p | 8 | __...... | 3 | 75 |
| MIMAT0031919 | dre-miR-10b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0017092 | rno-miR-10b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004556 | hsa-miR-10b-3p | 1 | _......_ | 6 | 75 |
