| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tacagatt | 8 | ||
| MIMAT0005239 | smo-miR1087 | 1 | ........ | 8 | 100 |
| MIMAT0036399 | gma-miR9762 | 1 | ......._ | 7 | 87 |
| MIMAT0035914 | chi-miR-10b-3p | 1 | _....... | 7 | 87 |
| MIMAT0035304 | gsa-miR-993-5p | 7 | ......._ | 1 | 87 |
| MIMAT0034920 | efu-miR-10 | 1 | _....... | 7 | 87 |
| MIMAT0033897 | atr-miR2111 | 8 | _....... | 2 | 87 |
| MIMAT0032298 | ssa-miR-10b-3-3p | 1 | _....... | 7 | 87 |
| MIMAT0032297 | ssa-miR-10b-2-3p | 1 | _....... | 7 | 87 |
| MIMAT0031649 | bbe-miR-217-3p | 7 | _....... | 1 | 87 |
| MIMAT0030335 | hhi-miR-723 | 8 | _....... | 2 | 87 |
| MIMAT0029827 | mmu-miR-7660-3p | 7 | ......._ | 1 | 87 |
| MIMAT0028892 | mdo-miR-7397-5p | 7 | _....... | 1 | 87 |
| MIMAT0028890 | mdo-miR-7396-5p | 8 | ......._ | 2 | 87 |
| MIMAT0024841 | hvu-miR6213 | 1 | _....... | 7 | 87 |
| MIMAT0023738 | cgr-miR-10b-3p | 1 | _....... | 7 | 87 |
| MIMAT0022472 | hsa-miR-5683 | 1 | ......._ | 7 | 87 |
| MIMAT0018114 | hsa-miR-3686 | 7 | ......._ | 1 | 87 |
| MIMAT0011789 | dme-miR-2281-3p | 8 | ......._ | 2 | 87 |
| MIMAT0031919 | dre-miR-10b-3p | 1 | _....... | 7 | 87 |
| MIMAT0017092 | rno-miR-10b-3p | 1 | _....... | 7 | 87 |
| MIMAT0004556 | hsa-miR-10b-3p | 1 | _....... | 7 | 87 |
| MIMAT0034574 | eca-miR-9032 | 1 | .g...... | 8 | 87 |
| MIMAT0016654 | cin-miR-4082-3p | 8 | ......a. | 1 | 87 |
| MIMAT0007597 | gga-miR-1705 | 8 | .c...... | 1 | 87 |
| MIMAT0037013 | ssc-miR-9795-3p | 1 | __...... | 6 | 75 |
| MIMAT0036818 | oha-miR-205b-3p | 1 | __...... | 6 | 75 |
| MIMAT0036665 | oha-miR-10c-3p | 1 | __...... | 6 | 75 |
| MIMAT0035874 | bra-miR2111-5p | 7 | __...... | 2 | 75 |
| MIMAT0035806 | tae-miR6197-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035597 | dvi-miR-981-5p | 1 | __...... | 6 | 75 |
| MIMAT0035593 | dvi-miR-973-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035103 | efu-miR-9339 | 1 | __...... | 6 | 75 |
| MIMAT0034956 | efu-miR-9295 | 6 | ......__ | 1 | 75 |
| MIMAT0034892 | efu-miR-9264 | 1 | ......__ | 6 | 75 |
| MIMAT0033772 | pxy-miR-8530-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031864 | bma-miR-84-3p | 2 | __...... | 7 | 75 |
| MIMAT0031520 | ppe-miR2111d | 7 | __...... | 2 | 75 |
| MIMAT0031519 | ppe-miR2111c | 7 | __...... | 2 | 75 |
| MIMAT0031518 | ppe-miR2111b | 7 | __...... | 2 | 75 |
| MIMAT0031517 | ppe-miR2111a | 7 | __...... | 2 | 75 |
| MIMAT0031384 | aly-miR2111c-5p | 7 | __...... | 2 | 75 |
| MIMAT0030481 | prd-miR-7869-3p | 8 | ......__ | 3 | 75 |
| MIMAT0030332 | hhi-miR-7788 | 1 | __...... | 6 | 75 |
| MIMAT0030234 | bdi-miR7747-5p | 3 | __...... | 8 | 75 |
| MIMAT0029646 | crm-miR-254 | 1 | ......__ | 6 | 75 |
| MIMAT0029307 | mes-miR2111b | 7 | __...... | 2 | 75 |
| MIMAT0029306 | mes-miR2111a | 7 | __...... | 2 | 75 |
| MIMAT0028646 | mdo-miR-7323-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028381 | mml-miR-7207-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028349 | mml-miR-7194-3p | 3 | __...... | 8 | 75 |
| MIMAT0028340 | mml-miR-7191-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028146 | ssc-miR-7135-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026169 | cme-miR2111b | 7 | __...... | 2 | 75 |
| MIMAT0026155 | cme-miR2111a | 7 | __...... | 2 | 75 |
| MIMAT0026015 | mdm-miR2111b | 7 | __...... | 2 | 75 |
| MIMAT0026014 | mdm-miR2111a | 7 | __...... | 2 | 75 |
| MIMAT0028098 | ddi-miR-7095-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027677 | hsa-miR-6888-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025735 | gga-miR-6639-5p | 1 | ......__ | 6 | 75 |
| MIMAT0025656 | gga-miR-6574-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025577 | bta-miR-2285t | 8 | __...... | 3 | 75 |
| MIMAT0025272 | ptc-miR2111b | 7 | __...... | 2 | 75 |
| MIMAT0025270 | ptc-miR2111a | 7 | __...... | 2 | 75 |
| MIMAT0025061 | rno-miR-6322 | 8 | ......__ | 3 | 75 |
| MIMAT0024798 | hvu-miR1130 | 6 | ......__ | 1 | 75 |
| MIMAT0024343 | mml-miR-1284 | 6 | ......__ | 1 | 75 |
| MIMAT0027112 | mml-miR-3200-5p | 7 | __...... | 2 | 75 |
| MIMAT0023868 | cgr-miR-2424 | 1 | _......_ | 6 | 75 |
| MIMAT0023647 | bna-miR2111c | 7 | __...... | 2 | 75 |
| MIMAT0023646 | bna-miR2111d | 7 | __...... | 2 | 75 |
| MIMAT0023324 | hco-miR-5889 | 8 | ......__ | 3 | 75 |
| MIMAT0023238 | gma-miR2111f | 7 | __...... | 2 | 75 |
| MIMAT0023237 | gma-miR2111e | 7 | __...... | 2 | 75 |
| MIMAT0023221 | gma-miR2111c | 7 | __...... | 2 | 75 |
| MIMAT0023220 | gma-miR2111b | 7 | __...... | 2 | 75 |
| MIMAT0022449 | gma-miR5667-3p | 3 | _......_ | 8 | 75 |
| MIMAT0022239 | mtr-miR2111a-5p | 7 | __...... | 2 | 75 |
| MIMAT0022083 | aca-miR-5456 | 6 | ......__ | 1 | 75 |
| MIMAT0022013 | aca-miR-5402-3p | 7 | ......__ | 2 | 75 |
| MIMAT0022008 | aca-miR-5399-5p | 2 | __...... | 7 | 75 |
| MIMAT0021478 | asu-miR-84-3p | 2 | __...... | 7 | 75 |
| MIMAT0021395 | rmi-miR-5322 | 7 | ......__ | 2 | 75 |
| MIMAT0021256 | mtr-miR2111f | 7 | __...... | 2 | 75 |
| MIMAT0020450 | tcc-miR2111 | 7 | __...... | 2 | 75 |
| MIMAT0019873 | hsa-miR-4742-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016652 | cin-miR-4081-3p | 8 | ......__ | 3 | 75 |
| MIMAT0016519 | cin-miR-4014-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016370 | bra-miR2111b-5p | 7 | __...... | 2 | 75 |
| MIMAT0016368 | bra-miR2111a-5p | 7 | __...... | 2 | 75 |
| MIMAT0016366 | lja-miR2111-5p | 7 | __...... | 2 | 75 |
| MIMAT0016364 | vvi-miR2111-5p | 7 | __...... | 2 | 75 |
| MIMAT0017659 | aly-miR2111b-5p | 7 | __...... | 2 | 75 |
| MIMAT0017657 | aly-miR2111a-5p | 7 | __...... | 2 | 75 |
| MIMAT0017392 | hsa-miR-3200-5p | 6 | __...... | 1 | 75 |
| MIMAT0015005 | hsa-miR-3137 | 6 | ......__ | 1 | 75 |
| MIMAT0014446 | cel-miR-2953-5p | 1 | ......__ | 6 | 75 |
| MIMAT0013785 | bmo-miR-2852 | 1 | __...... | 6 | 75 |
| MIMAT0013361 | mtr-miR2111k | 7 | __...... | 2 | 75 |
| MIMAT0013360 | mtr-miR2111j | 7 | __...... | 2 | 75 |
| MIMAT0013358 | mtr-miR2111b | 7 | __...... | 2 | 75 |
| MIMAT0013300 | mtr-miR2111o | 7 | __...... | 2 | 75 |
| MIMAT0013299 | mtr-miR2111n | 7 | __...... | 2 | 75 |
| MIMAT0013297 | mtr-miR2111m-5p | 7 | __...... | 2 | 75 |
| MIMAT0013296 | mtr-miR2111i | 7 | __...... | 2 | 75 |
| MIMAT0013295 | mtr-miR2111h | 7 | __...... | 2 | 75 |
| MIMAT0013294 | mtr-miR2111g-5p | 7 | __...... | 2 | 75 |
| MIMAT0013292 | mtr-miR2111e-5p | 7 | __...... | 2 | 75 |
| MIMAT0013291 | mtr-miR2111d-5p | 7 | __...... | 2 | 75 |
| MIMAT0013289 | mtr-miR2111c | 7 | __...... | 2 | 75 |
| MIMAT0011849 | bta-miR-1721 | 2 | _......_ | 7 | 75 |
| MIMAT0011833 | bta-miR-2285b | 8 | __...... | 3 | 75 |
| MIMAT0011782 | bna-miR2111a-5p | 7 | __...... | 2 | 75 |
| MIMAT0011780 | bna-miR2111b-5p | 7 | __...... | 2 | 75 |
| MIMAT0011409 | sme-miR-2205-3p | 6 | ......__ | 1 | 75 |
| MIMAT0011152 | ath-miR2111b-5p | 7 | __...... | 2 | 75 |
| MIMAT0011150 | ath-miR2111a-5p | 7 | __...... | 2 | 75 |
| MIMAT0026764 | gga-miR-1462-3p | 7 | _......_ | 2 | 75 |
| MIMAT0007176 | oan-miR-1390-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020872 | dme-miR-975-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004883 | mmu-miR-466g | 2 | ......__ | 7 | 75 |
| MIMAT0002070 | ptc-miR475d-3p | 2 | ......__ | 7 | 75 |
| MIMAT0003394 | dre-miR-10d-3p | 1 | __...... | 6 | 75 |
| MIMAT0031891 | cel-miR-254-5p | 1 | ......__ | 6 | 75 |
| MIMAT0004538 | mmu-miR-10b-3p | 1 | __...... | 6 | 75 |
