| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tacagttt | 8 | ||
| MIMAT0028179 | dev-miR-D8-3p | 1 | ........ | 8 | 100 |
| MIMAT0037052 | ssc-miR-9834-5p | 1 | ......._ | 7 | 87 |
| MIMAT0036279 | chi-miR-582-5p | 1 | ......._ | 7 | 87 |
| MIMAT0025820 | gga-miR-6710-3p | 7 | _....... | 1 | 87 |
| MIMAT0024840 | hvu-miR6212 | 2 | ......._ | 8 | 87 |
| MIMAT0024202 | ggo-miR-582 | 2 | ......._ | 8 | 87 |
| MIMAT0023522 | ath-miR5998b | 1 | _....... | 7 | 87 |
| MIMAT0023521 | ath-miR5998a | 1 | _....... | 7 | 87 |
| MIMAT0026459 | hhv6b-miR-Ro6-2-3p | 2 | ......._ | 8 | 87 |
| MIMAT0016234 | ppy-miR-1537 | 8 | _....... | 2 | 87 |
| MIMAT0016024 | ppy-miR-582-5p | 2 | ......._ | 8 | 87 |
| MIMAT0013103 | eca-miR-582-5p | 2 | ......._ | 8 | 87 |
| MIMAT0012833 | rno-miR-582-5p | 1 | ......._ | 7 | 87 |
| MIMAT0011933 | bta-miR-2384 | 7 | ......._ | 1 | 87 |
| MIMAT0009916 | cfa-miR-582 | 1 | ......._ | 7 | 87 |
| MIMAT0009351 | bta-miR-582 | 2 | ......._ | 8 | 87 |
| MIMAT0008255 | ptr-miR-582 | 1 | ......._ | 7 | 87 |
| MIMAT0007825 | osa-miR1872 | 8 | ......._ | 2 | 87 |
| MIMAT0006443 | mml-miR-582-5p | 2 | ......._ | 8 | 87 |
| MIMAT0005912 | hsa-miR-548g-3p | 8 | _....... | 2 | 87 |
| MIMAT0005291 | mmu-miR-582-5p | 2 | ......._ | 8 | 87 |
| MIMAT0003750 | dre-miR-723-5p | 2 | _....... | 8 | 87 |
| MIMAT0003247 | hsa-miR-582-5p | 2 | ......._ | 8 | 87 |
| MIMAT0002183 | kshv-miR-K12-2-5p | 7 | ......._ | 1 | 87 |
| MIMAT0036726 | oha-miR-144-3p | 1 | ......a. | 8 | 87 |
| MIMAT0035966 | chi-miR-144-3p | 1 | ......a. | 8 | 87 |
| MIMAT0035534 | bdi-miR2275b | 1 | .t...... | 8 | 87 |
| MIMAT0033457 | str-miR-255-3p | 8 | .t...... | 1 | 87 |
| MIMAT0030761 | prd-miR-255-3p | 8 | .t...... | 1 | 87 |
| MIMAT0029922 | crm-miR-255 | 8 | .t...... | 1 | 87 |
| MIMAT0029768 | cbn-miR-255 | 8 | .t...... | 1 | 87 |
| MIMAT0031137 | aja-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0028545 | mdo-miR-7262b-3p | 8 | .c...... | 1 | 87 |
| MIMAT0025437 | pol-miR-144-3p | 1 | ......a. | 8 | 87 |
| MIMAT0025364 | ssc-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0024338 | mml-miR-1243-3p | 8 | .c...... | 1 | 87 |
| MIMAT0023411 | hco-miR-255 | 8 | .t...... | 1 | 87 |
| MIMAT0022669 | ola-miR-145 | 1 | .c...... | 8 | 87 |
| MIMAT0021772 | aca-miR-144-3p | 1 | ......a. | 8 | 87 |
| MIMAT0019475 | pma-miR-144-3p | 1 | ......a. | 8 | 87 |
| MIMAT0015600 | bmo-miR-3396 | 1 | .c...... | 8 | 87 |
| MIMAT0014596 | tgu-miR-144-3p | 1 | ......a. | 8 | 87 |
| MIMAT0013024 | eca-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0011888 | bta-miR-2352 | 8 | .t...... | 1 | 87 |
| MIMAT0011772 | zma-miR2275c-3p | 1 | .t...... | 8 | 87 |
| MIMAT0011770 | zma-miR2275b-3p | 1 | .t...... | 8 | 87 |
| MIMAT0009234 | bta-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0007766 | osa-miR1847.1 | 1 | .g...... | 8 | 87 |
| MIMAT0006734 | cfa-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0006202 | mml-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0006903 | oan-miR-144-3p | 1 | ......a. | 8 | 87 |
| MIMAT0004297 | cbr-miR-255 | 8 | .t...... | 1 | 87 |
| MIMAT0004114 | mdo-miR-144-3p | 1 | ......a. | 8 | 87 |
| MIMAT0003687 | xtr-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0003021 | tni-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0003020 | fru-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0002265 | ppa-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0002264 | mne-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0002263 | ppy-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0002262 | ptr-miR-144 | 1 | ......a. | 8 | 87 |
| MIMAT0001841 | dre-miR-144-3p | 1 | ......a. | 8 | 87 |
| MIMAT0000850 | rno-miR-144-3p | 1 | ......a. | 8 | 87 |
| MIMAT0000436 | hsa-miR-144-3p | 1 | ......a. | 8 | 87 |
| MIMAT0004216 | cel-miR-255-3p | 8 | .t...... | 1 | 87 |
| MIMAT0000156 | mmu-miR-144-3p | 1 | ......a. | 8 | 87 |
| MIMAT0036844 | oha-miR-22b | 1 | _......_ | 6 | 75 |
| MIMAT0036806 | oha-miR-20b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036794 | oha-miR-199c-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036715 | oha-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036696 | oha-miR-1329-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036653 | oha-miR-101b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036651 | oha-miR-101a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036641 | oha-let-7g-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036540 | tch-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036507 | tch-miR-101 | 2 | ......__ | 7 | 75 |
| MIMAT0035900 | chi-miR-101-3p | 1 | ......__ | 6 | 75 |
| MIMAT0035771 | tae-miR396-5p | 6 | _......_ | 1 | 75 |
| MIMAT0035748 | rno-miR-452-5p | 6 | _......_ | 1 | 75 |
| MIMAT0035607 | dvi-miR-994-3p | 2 | _......_ | 7 | 75 |
| MIMAT0034946 | efu-miR-199 | 1 | ......__ | 6 | 75 |
| MIMAT0034913 | efu-miR-101 | 2 | ......__ | 7 | 75 |
| MIMAT0034657 | eca-miR-9109 | 7 | _......_ | 2 | 75 |
| MIMAT0034495 | eca-miR-8961 | 2 | ......__ | 7 | 75 |
| MIMAT0034043 | gra-miR8671 | 6 | _......_ | 1 | 75 |
| MIMAT0033636 | sma-miR-96-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032368 | ssa-miR-144-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032356 | ssa-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032283 | ssa-miR-101b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032281 | ssa-miR-101a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031569 | bbe-let-7a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031546 | ppe-miR8127-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030750 | prd-miR-7945-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030601 | prd-miR-7901-3p | 7 | ......__ | 2 | 75 |
| MIMAT0030586 | prd-miR-7897-5p | 3 | __...... | 8 | 75 |
| MIMAT0030477 | prd-miR-7868-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030435 | bta-miR-2285aa | 7 | __...... | 2 | 75 |
| MIMAT0030434 | bta-miR-7859 | 8 | __...... | 3 | 75 |
| MIMAT0029834 | mmu-miR-7664-5p | 1 | __...... | 6 | 75 |
| MIMAT0029805 | mmu-miR-7651-3p | 2 | __...... | 7 | 75 |
| MIMAT0029552 | ipu-miR-7556 | 1 | ......__ | 6 | 75 |
| MIMAT0029421 | ipu-miR-144 | 2 | ......__ | 7 | 75 |
| MIMAT0029416 | ipu-miR-139 | 3 | ......__ | 8 | 75 |
| MIMAT0029387 | ipu-miR-101b | 1 | ......__ | 6 | 75 |
| MIMAT0029386 | ipu-miR-101a | 1 | ......__ | 6 | 75 |
| MIMAT0029051 | gga-miR-7448-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028765 | mdo-miR-20b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026225 | ccr-miR-144 | 2 | ......__ | 7 | 75 |
| MIMAT0026219 | ccr-miR-139 | 3 | ......__ | 8 | 75 |
| MIMAT0026197 | ccr-miR-101b | 2 | ......__ | 7 | 75 |
| MIMAT0026196 | ccr-miR-101a | 1 | ......__ | 6 | 75 |
| MIMAT0027847 | mmu-miR-6972-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025457 | hsa-miR-548az-3p | 8 | __...... | 3 | 75 |
| MIMAT0025374 | ssc-miR-452 | 6 | _......_ | 1 | 75 |
| MIMAT0024285 | ggo-miR-508 | 6 | ......__ | 1 | 75 |
| MIMAT0024284 | ggo-miR-4738 | 8 | __...... | 3 | 75 |
| MIMAT0024276 | ggo-miR-548e | 8 | __...... | 3 | 75 |
| MIMAT0024211 | ggo-miR-452 | 6 | _......_ | 1 | 75 |
| MIMAT0024106 | ggo-miR-139 | 3 | ......__ | 8 | 75 |
| MIMAT0024057 | ptr-miR-548e | 8 | __...... | 3 | 75 |
| MIMAT0023765 | cgr-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023729 | cgr-miR-101b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0023343 | hco-miR-5898-3p | 1 | __...... | 6 | 75 |
| MIMAT0022811 | sha-miR-101 | 2 | ......__ | 7 | 75 |
| MIMAT0022803 | sha-miR-139 | 3 | ......__ | 8 | 75 |
| MIMAT0022773 | sha-miR-1329 | 1 | ......__ | 6 | 75 |
| MIMAT0022616 | ola-miR-139 | 3 | ......__ | 8 | 75 |
| MIMAT0022606 | ola-miR-101b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0022543 | ola-miR-101a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0022322 | cin-miR-5599-3p | 1 | ......__ | 6 | 75 |
| MIMAT0022304 | hsa-miR-548av-3p | 7 | __...... | 2 | 75 |
| MIMAT0022266 | hsa-miR-548ar-3p | 8 | __...... | 3 | 75 |
| MIMAT0021877 | aca-miR-216b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021864 | aca-miR-20b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0021762 | aca-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021747 | aca-miR-1329-5p | 1 | ......__ | 6 | 75 |
| MIMAT0021711 | aca-miR-101-3p | 1 | ......__ | 6 | 75 |
| MIMAT0021352 | mtr-miR5286b | 8 | __...... | 3 | 75 |
| MIMAT0020566 | tae-miR5084 | 2 | ......__ | 7 | 75 |
| MIMAT0020557 | bdi-miR5058 | 2 | _......_ | 7 | 75 |
| MIMAT0020531 | ath-miR5025 | 6 | ......__ | 1 | 75 |
| MIMAT0020028 | sko-miR-4823-3p | 3 | __...... | 8 | 75 |
| MIMAT0019867 | hsa-miR-4738-3p | 8 | __...... | 3 | 75 |
| MIMAT0019560 | pma-miR-1329 | 1 | ......__ | 6 | 75 |
| MIMAT0019496 | pma-miR-190b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017985 | hsa-miR-3607-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016932 | bta-miR-3600 | 1 | _......_ | 6 | 75 |
| MIMAT0016926 | hsa-miR-4328 | 2 | __...... | 7 | 75 |
| MIMAT0016718 | cin-miR-4124-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016147 | ppy-miR-1183 | 7 | ......__ | 2 | 75 |
| MIMAT0015897 | ppy-miR-452 | 6 | _......_ | 1 | 75 |
| MIMAT0015761 | ppy-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017686 | aly-miR3433-3p | 3 | _......_ | 8 | 75 |
| MIMAT0015605 | bmo-miR-3401 | 3 | ......__ | 8 | 75 |
| MIMAT0014956 | mmu-miR-3112-3p | 1 | __...... | 6 | 75 |
| MIMAT0027017 | tgu-miR-20b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027008 | tgu-miR-216a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0014508 | tgu-miR-101-3p | 2 | ......__ | 7 | 75 |
| MIMAT0014500 | tgu-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014449 | tgu-miR-1329-5p | 1 | ......__ | 6 | 75 |
| MIMAT0012983 | eca-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012951 | eca-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0012744 | mdo-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013742 | bmo-miR-2807b | 7 | _......_ | 2 | 75 |
| MIMAT0012240 | dps-miR-994-3p | 2 | _......_ | 7 | 75 |
| MIMAT0012211 | dme-miR-2498-3p | 6 | __...... | 1 | 75 |
| MIMAT0012059 | bta-miR-2469 | 8 | ......__ | 3 | 75 |
| MIMAT0011871 | bta-miR-199c | 1 | ......__ | 6 | 75 |
| MIMAT0011797 | bta-miR-2285a | 8 | __...... | 3 | 75 |
| MIMAT0012148 | sme-miR-2157-3p | 1 | __...... | 6 | 75 |
| MIMAT0010185 | ssc-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0019176 | bfl-let-7a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0009900 | cfa-miR-452 | 6 | _......_ | 1 | 75 |
| MIMAT0022953 | spu-miR-219-3p | 8 | _......_ | 3 | 75 |
| MIMAT0008221 | ptr-miR-548f | 8 | __...... | 3 | 75 |
| MIMAT0008218 | ptr-miR-548a | 8 | __...... | 3 | 75 |
| MIMAT0008154 | ptr-miR-452 | 6 | _......_ | 1 | 75 |
| MIMAT0007951 | ptr-miR-1183 | 7 | ......__ | 2 | 75 |
| MIMAT0007760 | ssc-miR-199b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0006600 | cfa-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0026913 | mml-miR-890-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006471 | mml-miR-625 | 8 | ......__ | 3 | 75 |
| MIMAT0006336 | mml-miR-452-5p | 6 | _......_ | 1 | 75 |
| MIMAT0006195 | mml-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0026799 | mml-miR-20b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007502 | gga-miR-1631 | 6 | __...... | 1 | 75 |
| MIMAT0007420 | gga-miR-1562-5p | 8 | ......__ | 3 | 75 |
| MIMAT0006099 | cin-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0006046 | odi-miR-1493 | 8 | _......_ | 3 | 75 |
| MIMAT0007317 | oan-miR-1422q-3p | 8 | __...... | 3 | 75 |
| MIMAT0007281 | gga-miR-1329-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007093 | oan-miR-1422j-3p | 7 | __...... | 2 | 75 |
| MIMAT0007011 | oan-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0006904 | oan-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0006894 | oan-miR-1422i-3p | 7 | __...... | 2 | 75 |
| MIMAT0006854 | oan-miR-20b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0006798 | oan-miR-1329-5p | 1 | ......__ | 6 | 75 |
| MIMAT0005895 | hsa-miR-548f-3p | 8 | __...... | 3 | 75 |
| MIMAT0005874 | hsa-miR-548e-3p | 8 | __...... | 3 | 75 |
| MIMAT0005828 | hsa-miR-1183 | 7 | ......__ | 2 | 75 |
| MIMAT0005289 | rno-miR-881-3p | 7 | _......_ | 2 | 75 |
| MIMAT0020894 | dme-miR-994-3p | 2 | _......_ | 7 | 75 |
| MIMAT0004846 | mmu-miR-881-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004258 | ath-miR837-5p | 3 | __...... | 8 | 75 |
| MIMAT0004098 | mdo-miR-101-3p | 1 | ......__ | 6 | 75 |
| MIMAT0012105 | sme-miR-61a-5p | 1 | __...... | 6 | 75 |
| MIMAT0003788 | bta-miR-139 | 3 | ......__ | 8 | 75 |
| MIMAT0003776 | gga-miR-144-3p | 2 | ......__ | 7 | 75 |
| MIMAT0003662 | xtr-miR-101a | 1 | ......__ | 6 | 75 |
| MIMAT0003619 | xtr-miR-199a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0003600 | xtr-miR-139 | 3 | ......__ | 8 | 75 |
| MIMAT0003520 | bta-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0003349 | dre-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003251 | hsa-miR-548a-3p | 8 | __...... | 3 | 75 |
| MIMAT0003040 | tni-miR-101b | 1 | ......__ | 6 | 75 |
| MIMAT0003039 | fru-miR-101b | 1 | ......__ | 6 | 75 |
| MIMAT0002903 | tni-miR-101a | 1 | ......__ | 6 | 75 |
| MIMAT0002902 | fru-miR-101a | 1 | ......__ | 6 | 75 |
| MIMAT0002473 | ppa-miR-139 | 3 | ......__ | 8 | 75 |
| MIMAT0002472 | lla-miR-139 | 3 | ......__ | 8 | 75 |
| MIMAT0002433 | mne-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0002432 | lla-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0002431 | mml-miR-101-3p | 1 | ......__ | 6 | 75 |
| MIMAT0002430 | ptr-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0002429 | ppy-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0002428 | ppa-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0002427 | age-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0002426 | sla-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0002425 | ggo-miR-101 | 1 | ......__ | 6 | 75 |
| MIMAT0002159 | ssc-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0002068 | ptc-miR475b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0002067 | ptc-miR475a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0001815 | dre-miR-101b | 1 | ......__ | 6 | 75 |
| MIMAT0001814 | dre-miR-101a | 1 | ......__ | 6 | 75 |
| MIMAT0001635 | hsa-miR-452-5p | 6 | _......_ | 1 | 75 |
| MIMAT0001569 | mghv-miR-M1-6-3p | 8 | __...... | 3 | 75 |
| MIMAT0004752 | hsa-miR-20b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026551 | gga-miR-20b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0003155 | dre-miR-199-3p | 1 | ......__ | 6 | 75 |
| MIMAT0001185 | gga-miR-101-3p | 2 | ......__ | 7 | 75 |
| MIMAT0003721 | gga-miR-199-3p | 1 | ......__ | 6 | 75 |
| MIMAT0001002 | ath-miR401 | 8 | __...... | 3 | 75 |
| MIMAT0000845 | rno-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000823 | rno-miR-101a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0000656 | mmu-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000616 | mmu-miR-101b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000615 | rno-miR-101b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0000250 | hsa-miR-139-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000133 | mmu-miR-101a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0004519 | mmu-let-7g-3p | 6 | ......__ | 1 | 75 |
| MIMAT0000099 | hsa-miR-101-3p | 1 | ......__ | 6 | 75 |
| MIMAT0020309 | cel-miR-49-5p | 3 | __...... | 8 | 75 |
