| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tacccgc | 7 | ||
| MIMAT0032876 | ppc-miR-8221-5p | 7 | ....... | 1 | 100 |
| MIMAT0028198 | dev-miR-D22-5p | 2 | ....... | 8 | 100 |
| MIMAT0021568 | asu-miR-5354-5p | 7 | ....... | 1 | 100 |
| MIMAT0036348 | gma-miR5671b | 1 | ......_ | 6 | 85 |
| MIMAT0034719 | eca-miR-8908i | 1 | ......_ | 6 | 85 |
| MIMAT0034649 | eca-miR-9102 | 6 | _...... | 1 | 85 |
| MIMAT0033385 | str-miR-8366b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0033307 | str-miR-8366a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0033150 | ppc-miR-8310-5p | 8 | _...... | 3 | 85 |
| MIMAT0032997 | ppc-miR-2237d-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030573 | prd-miR-5358b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0030545 | prd-miR-7887-3p | 1 | ......_ | 6 | 85 |
| MIMAT0030535 | prd-miR-5358a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0029690 | cbn-miR-51 | 1 | ......_ | 6 | 85 |
| MIMAT0029689 | cbn-miR-56 | 1 | ......_ | 6 | 85 |
| MIMAT0029688 | cbn-miR-55 | 1 | ......_ | 6 | 85 |
| MIMAT0029687 | cbn-miR-54 | 1 | ......_ | 6 | 85 |
| MIMAT0029636 | crm-miR-51 | 1 | ......_ | 6 | 85 |
| MIMAT0029635 | crm-miR-56 | 1 | ......_ | 6 | 85 |
| MIMAT0029602 | cbr-miR-7595 | 1 | ......_ | 6 | 85 |
| MIMAT0029328 | lja-miR7516-5p | 8 | _...... | 3 | 85 |
| MIMAT0028114 | hsa-miR-7108-3p | 1 | _...... | 6 | 85 |
| MIMAT0027994 | mmu-miR-7045-5p | 7 | _...... | 2 | 85 |
| MIMAT0025162 | mmu-miR-6409 | 7 | _...... | 2 | 85 |
| MIMAT0023674 | ame-miR-6050 | 6 | _...... | 1 | 85 |
| MIMAT0023441 | hco-miR-55 | 1 | ......_ | 6 | 85 |
| MIMAT0023344 | hco-miR-5899 | 1 | ......_ | 6 | 85 |
| MIMAT0023337 | hco-miR-5895 | 1 | ......_ | 6 | 85 |
| MIMAT0021599 | asu-miR-5358b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0021579 | asu-miR-5358a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0021491 | asu-miR-100c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0021463 | asu-miR-56 | 1 | ......_ | 6 | 85 |
| MIMAT0020577 | bdi-miR5068 | 8 | ......_ | 3 | 85 |
| MIMAT0018402 | ngi-miR-100 | 1 | ......_ | 6 | 85 |
| MIMAT0018076 | hsa-miR-3656 | 7 | _...... | 2 | 85 |
| MIMAT0018002 | hsa-miR-3621 | 7 | _...... | 2 | 85 |
| MIMAT0014433 | cqu-miR-2951-3p | 1 | _...... | 6 | 85 |
| MIMAT0014315 | aae-miR-2945-5p | 7 | _...... | 2 | 85 |
| MIMAT0014115 | bma-miR-100d | 1 | ......_ | 6 | 85 |
| MIMAT0013790 | bmo-miR-2855 | 6 | ......_ | 1 | 85 |
| MIMAT0011728 | ppc-miR-2237c | 1 | ......_ | 6 | 85 |
| MIMAT0011717 | ppc-miR-56 | 1 | ......_ | 6 | 85 |
| MIMAT0011716 | ppc-miR-55a | 1 | ......_ | 6 | 85 |
| MIMAT0011703 | ppc-miR-2237b | 1 | ......_ | 6 | 85 |
| MIMAT0011702 | ppc-miR-2237a | 1 | ......_ | 6 | 85 |
| MIMAT0011688 | ppc-miR-2262 | 1 | ......_ | 6 | 85 |
| MIMAT0011552 | crm-miR-55-3p | 1 | ......_ | 6 | 85 |
| MIMAT0011496 | cbr-miR-54d | 1 | ......_ | 6 | 85 |
| MIMAT0011495 | cbr-miR-54c | 1 | ......_ | 6 | 85 |
| MIMAT0011494 | cbr-miR-54b | 1 | ......_ | 6 | 85 |
| MIMAT0011478 | cbr-miR-54a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0026841 | mml-miR-197-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012098 | sme-miR-7c-3p | 8 | _...... | 3 | 85 |
| MIMAT0001310 | cbr-miR-55 | 1 | ......_ | 6 | 85 |
| MIMAT0001297 | cbr-miR-51 | 1 | ......_ | 6 | 85 |
| MIMAT0000320 | cel-miR-264 | 7 | _...... | 2 | 85 |
| MIMAT0022691 | hsa-miR-197-5p | 6 | ......_ | 1 | 85 |
| MIMAT0000028 | cel-miR-56-3p | 1 | ......_ | 6 | 85 |
| MIMAT0000026 | cel-miR-55-3p | 1 | ......_ | 6 | 85 |
| MIMAT0000025 | cel-miR-54-3p | 1 | ......_ | 6 | 85 |
| MIMAT0000022 | cel-miR-51-5p | 1 | ......_ | 6 | 85 |
