| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tacggcg | 7 | ||
| MIMAT0004408 | rrv-miR-rR1-2 | 2 | ....... | 8 | 100 |
| MIMAT0036355 | gma-miR9735 | 1 | ......_ | 6 | 85 |
| MIMAT0032888 | ppc-miR-42c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032878 | ppc-miR-8222-5p | 1 | _...... | 6 | 85 |
| MIMAT0030704 | prd-miR-7928-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028466 | mdo-miR-7250-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028449 | mmu-miR-7240-3p | 6 | _...... | 1 | 85 |
| MIMAT0026296 | ccr-miR-738 | 3 | ......_ | 8 | 85 |
| MIMAT0025633 | gga-miR-6564-5p | 6 | _...... | 1 | 85 |
| MIMAT0024862 | mmu-miR-6241 | 2 | _...... | 7 | 85 |
| MIMAT0020131 | cel-miR-4923b | 2 | _...... | 7 | 85 |
| MIMAT0019630 | pma-miR-4597 | 7 | _...... | 2 | 85 |
| MIMAT0013964 | bhv1-miR-B3 | 3 | _...... | 8 | 85 |
| MIMAT0013694 | bmo-miR-2794 | 1 | _...... | 6 | 85 |
| MIMAT0009782 | nve-miR-2031-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017336 | gma-miR171b-5p | 1 | _...... | 6 | 85 |
| MIMAT0003769 | dre-miR-738 | 3 | ......_ | 8 | 85 |
